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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTTTAGTCAGGCTATTCAGGGTGAGATTCCACAAGAGCTGCAGATGGGACTAGTAAGTGGTAGGCAAGTCTTGCTCAAGACTGCAAACAGGCATACAAgtaagttctcattgcatttctttacagcaacatcagagaaagtgtatattgagtttggtgttttgtgcagttaacactatgaaccttcttgaaggaacta...

Basic information

species Oryza sativa
transcript LOC_Os01g37870.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88482039|gb|CI419310.1|CI419310
EST:     ACTAGTAAGTGGTAGGCAAGTCTTGCTCAAGACTGCAAACAGGCATACAA                         ATGAAATAGTGGACCAGAGTATCTGCTAATTCACACGTCCCTTTCAATGTG
genomic: ACTAGTAAGTGGTAGGCAAGTCTTGCTCAAGACTGCAAACAGGCATACAAgtaagttctc ... tttttgtcagATGAAATACTGGACCAGAGTATCTGCTAATTCACACGTCCCTTTCAATGTG
EST: gi|88510090|gb|CI437596.1|CI437596
EST:     ACTAGTAAGTGGTAGGCAAGTCTTGCTCAAGACTGCAAACAGGCATACAA                         ATGAAATACTGGACCAGAGTATCTGCTAATTCACACGTCCCTTTCAATGTG
genomic: ACTAGTAAGTGGTAGGCAAGTCTTGCTCAAGACTGCAAACAGGCATACAAgtaagttctc ... tttttgtcagATGAAATACTGGACCAGAGTATCTGCTAATTCACACGTCCCTTTCAATGTG
EST: gi|88471419|gb|CI408690.1|CI408690
EST:     CTANTAAGTGGGTAGGCAAGTCTTGCTCAAGACTGCAAACAGGCATACAA                         ATGAAATAGTGGACCAGAGTATCTGGTAATTCACACGTCCCTTTCAATGTG
genomic: CTAGTAAGT-GGTAGGCAAGTCTTGCTCAAGACTGCAAACAGGCATACAAgtaagttctc ... tttttgtcagATGAAATACTGGACCAGAGTATCTGCTAATTCACACGTCCCTTTCAATGTG
EST: gi|88471804|gb|CI409075.1|CI409075
EST:     ACTAGTAAGTGNTAGGCAAGTCTTGCTCAAGACTGCAAACAGGCATACAA                         ATGAAATACTGGACCAGAGTATCTGCTAATTCACACGTCCCTTTCAATGTG
genomic: ACTAGTAAGTGGTAGGCAAGTCTTGCTCAAGACTGCAAACAGGCATACAAgtaagttctc ... tttttgtcagATGAAATACTGGACCAGAGTATCTGCTAATTCACACGTCCCTTTCAATGTG