1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGAAGATTACGATGGCGGCAGGGAGTTGGATGACTTTGTCAAGTTCATTAATGAGAAGTGTGGTACCAGCCGTGATACTAAGGGCCAACTTACTTCAGAGgttggttgaatgcatataaaacttctttgcatgggtgagctcatgcaaaagactacctgttctgactatacattgtttattgttgtggtag
species | Oryza sativa |
transcript | LOC_Os01g23740.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATGAGAAGTGTGGTACCAGCCGTGATACTAAGGGCCAACTTACTTCAGAG GCGGGGCGCATAGCAAGTTTGGATGCCCTCGCAAAGGAGTTCCTTGGTGCTEST: gi|86601985|gb|CI258661.1|CI258661
genomic: ATGAGAAGTGTGGTACCAGCCGTGATACTAAGGGCCAACTTACTTCAGAGgttggttgaa ... gttgtggtagGCGGGGCGCATAGCAAGTTTGGATGCCCTCGCAAAGGAGTTCCTTGGTGCT
EST: CGTGATACTAAGGGCCAACTTACTTCAGAG GCGGGGCGCATAGCAAGTTTGGATGCCCTCGCAAAGGAGTTCCTTGGTGCTEST: gi|87031239|gb|CI259819.1|CI259819
genomic: CGTGATACTAAGGGCCAACTTACTTCAGAGgttggttgaa ... gttgtggtagGCGGGGCGCATAGCAAGTTTGGATGCCCTCGCAAAGGAGTTCCTTGGTGCT
EST: TGATACTAAGGGCCAACTTACTTCAGAG GCGGGGCGCATAGCAAGTTTGGATGCCCTCGCAAAGGAGTTCCTTGGTGCTEST: gi|27548511|gb|CA766443.2|CA766443
genomic: TGATACTAAGGGCCAACTTACTTCAGAGgttggttgaa ... gttgtggtagGCGGGGCGCATAGCAAGTTTGGATGCCCTCGCAAAGGAGTTCCTTGGTGCT
EST: ATGAGAAGTGTGGTACCAGCCGTGATACTAAGGGCCAACTTACTTCAGAG GCGGGGCGCATAGCAAGTTTGGATGCCCTCGCAAAGGAGTTCCTTGGTGCTEST: gi|89197971|gb|CI117449.1|CI117449
genomic: ATGAGAAGTGTGGTACCAGCCGTGATACTAAGGGCCAACTTACTTCAGAGgttggttgaa ... gttgtggtagGCGGGGCGCATAGCAAGTTTGGATGCCCTCGCAAAGGAGTTCCTTGGTGCT
EST: ATGAGAAGTGTGGTACCAGCCGTGATACTAAGGGCCAACTTACTTCAGAG GCGGGGCGCATAGCAAGTTTGGATGCCCTCGCAAAGGAGTTCCTTGGTGCTEST: gi|86503530|gb|CI146163.1|CI146163
genomic: ATGAGAAGTGTGGTACCAGCCGTGATACTAAGGGCCAACTTACTTCAGAGgttggttgaa ... gttgtggtagGCGGGGCGCATAGCAAGTTTGGATGCCCTCGCAAAGGAGTTCCTTGGTGCT
EST: ATGAGAAGTGTGGTACCAGCCGTGATACTAAGGGCCAACTTACTTCAGAG GCGGGGCGCATAGCAAGTTTGGATGCCCTCGCAAAGGAGTTCCTTGGTGCTEST: gi|88976785|gb|CI257527.1|CI257527
genomic: ATGAGAAGTGTGGTACCAGCCGTGATACTAAGGGCCAACTTACTTCAGAGgttggttgaa ... gttgtggtagGCGGGGCGCATAGCAAGTTTGGATGCCCTCGCAAAGGAGTTCCTTGGTGCT
EST: TGTGGTACCAGCCGTGATACTAAGGCCCAACTTACTTCAGAG GCGGGGCGCATAGCAAGTTTGGATGCCCTCGCAAAGGAGTTCCTTGGTGCTEST: gi|87016611|gb|CI275613.1|CI275613
genomic: TGTGGTACCAGCCGTGATACTAAGGGCCAACTTACTTCAGAGgttggttgaa ... gttgtggtagGCGGGGCGCATAGCAAGTTTGGATGCCCTCGCAAAGGAGTTCCTTGGTGCT
EST: ATGAGAAGTGTGGTACCAGCCGTGATACTAAGGGCCAACTTACTTCAGAG GCGGGGCGCATAGCAAGTTTGGATGCCCTCGCAAAGGAGTTCCTTGGTGCTEST: gi|58666550|gb|CK055236.1|CK055236
genomic: ATGAGAAGTGTGGTACCAGCCGTGATACTAAGGGCCAACTTACTTCAGAGgttggttgaa ... gttgtggtagGCGGGGCGCATAGCAAGTTTGGATGCCCTCGCAAAGGAGTTCCTTGGTGCT
EST: ATGAGAAGTGTGGTACCAGCCGTGATACTAAGGGCCAACTTACTTCAGAG GCGGGGCGCATAGCAAGTTTGGATGCCCTCGCAAAGGAGTTCCTTGGTGCT
genomic: ATGAGAAGTGTGGTACCAGCCGTGATACTAAGGGCCAACTTACTTCAGAGgttggttgaa ... gttgtggtagGCGGGGCGCATAGCAAGTTTGGATGCCCTCGCAAAGGAGTTCCTTGGTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAGATTACGATGGCGGCAGGGAGTTGGATGACTTTGTCAAGTTCATTAATGAGAAGTGTGGTACCAGCCGTGATACTAAGGGCCAACTTACTTCAGAGgttggttgaatgcatataaaacttctttgcatgggtgagctcatgcaaaagactacctgttctgactatacattgtttattgttgtggtag
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