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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgctgatctaattagtaattaccatttccttcaactatgcactgatatcttattttgtatcattggcttttggtggttctctgcagGGACAACATATGTGACATTCAGAGAAACATTCAGTTTAATAACCTTGGTG

Basic information

species Oryza sativa
transcript LOC_Os01g23590.3
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29681402|gb|CB677677.1|CB677677
EST:     ACAGAATTAGCGTTGAGCTTTCAGGAAGCTGCTGGGTGCTCATACATATG                         GGACAACATATGTGACATTCAGAGAAACATTCAGTTTAATAACCTTGGTG
genomic: ACAGAATTAGCGTTGAGCTTTCAGGAAGCTGCTGGGTGCTCATACATATGgtattgctga ... ttctctgcagGGACAACATATGTGACATTCAGAGAAACATTCAGTTTAATAACCTTGGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caactatgcactgatatcttattttgtatcattggcttttggtggttctctgcagGGACAACATATGTGACATTCAGAGAAACATTCAGTTTAATAACCTTGGTG
        cactgat  putative branch site (score: 3)
                                             ttctctgc  putative PPT
             atatcttattttgtat  TA-rich tract