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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGACCCAGATGTTCCTAAAGTACAAAAGCATCGCGCTTTTCTAAAGGATCATGTAGTTTTCAAAGAGgtactctgatcattgcacaccttggtctgattcagaaatgatttgaatgttaatgtagatcattgttcttccccacag

Basic information

species Oryza sativa
transcript LOC_Os01g23590.3
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29681402|gb|CB677677.1|CB677677
EST:     AAGTACAAAAGCATCGCGCTTTTCTAA-GGATCATGTAGTTTTCAA-GAG                         GCCATACCTATTAAAAATGTTTCTGTGGT
genomic: AAGTACAAAAGCATCGCGCTTTTCTAAAGGATCATGTAGTTTTCAAAGAGgtactctgat ... ttccccacagGCCATACCTATTAAAAATGTTTCTGTGGT
EST: gi|86854470|gb|CI256592.1|CI256592
EST:     AAGTACAAAAGCATCGCGCTTTTCTAAAGGATCATGTAGTTTTCAAAGAG                         GCCATACCTATTAAAAATGTTTCTGTGGTTTCAAAGATACATCAAACATAT
genomic: AAGTACAAAAGCATCGCGCTTTTCTAAAGGATCATGTAGTTTTCAAAGAGgtactctgat ... ttccccacagGCCATACCTATTAAAAATGTTTCTGTGGTTTCAAAGATACATCAAACATAT