Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttttctcctttgttgcttcttgtttcccccatttcatttccatatgatgaaattacatatgctatggttttaactgaaatgcttgtggggttgcttccgcatttttcttcatatattgagttctattctatacagATGACCCAGATGTTCCTAAAGTACAAAAGCATCGCGCTTTTCTAAAGGATCATGTAGTTTTCAAAGAG

Basic information

species Oryza sativa
transcript LOC_Os01g23590.3
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29681402|gb|CB677677.1|CB677677
EST:     CAAGATTTTCTCAGATGAGTTTATTCTTGACATCATAGGTGCCCTTGAAT                         ATGACCCAGATGTTCCTAAAGTACAAAAGCATCGCGCTTTTCTAA-GGATC
genomic: CAAGATTTTCTCAGATGAGTTTATTCTTGACATCATAGGTGCCCTTGAATgtatgttttc ... ttctatacagATGACCCAGATGTTCCTAAAGTACAAAAGCATCGCGCTTTTCTAAAGGATC
EST: gi|86854470|gb|CI256592.1|CI256592
EST:     CAAGATTTTCTCAGATGAGTTTATTCTTGACATCATAGGTGCCCTTGAAT                         ATGACCCAGATGTTCCTAAAGTACAAAAGCATCGCGCTTTTCTAAAGGATC
genomic: CAAGATTTTCTCAGATGAGTTTATTCTTGACATCATAGGTGCCCTTGAATgtatgttttc ... ttctatacagATGACCCAGATGTTCCTAAAGTACAAAAGCATCGCGCTTTTCTAAAGGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttgtggggttgcttccgcatttttcttcatatattgagttctattctatacagATGACCCAGATGTTCCTAAAGTACAAAAGCATCGCGCTTTTCTAAAGGATCATGTAGTTTTCAAAGAG
                                        ttctattct  CT-rich tract
                    atttttcttcatatat  TA-rich tract