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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGAGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAGgttcctgctctatcactgtaaatttcattgttctaacttgaagccattatgatcataggagttgttttaactgatatgacattgatgcttttag

Basic information

species Oryza sativa
transcript LOC_Os01g19470.1
intron # 26
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g19470.1 (Oryza sativa), 5'ss of exon 26
lower sequence: GRMZM2G014788_T01 (Zea mays), 5'ss of exon 26
GAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGAGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAGgttc-ctgctctatcactgtaaatttcattgttctaacttgaagccattatgatcataggagttgttttaactgatatgacattgatgcttttag
||| | || ||||| || || ||||| |||||||| |||||||| ||| ||||| |||| ||||| |||||||||||  ||||| | |||| || ||| |||| || | ||| |   |  | ||||    ||| |  | ||||   | || |    |||||   |  ||
GAACTGACCCCAGCACCAGTTTTTCCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAGgtttgctgctatctcacagtgaatctcatggtgc-aacctttggtaactatgggt-tagtaactattttctgtaatgtt---ttgatctgtgcag

upper sequence: LOC_Os01g19470.1 (Oryza sativa), 5'ss of exon 26
lower sequence: Vv07s0005g01650.t01 (Vitis vinifera), 5'ss of exon 26
GAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGAGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAGgtt--cctgctctatcactgtaaatttcattgttctaacttgaag----ccattatgatcataggagttgttttaactgatatgacat--tgatgcttttag--------
|||||||||||||| || || |||||||| || || |||||||| ||||||||  |  | ||||| ||||||||||   ||| |||  |  ||| |  ||| | |  ||     | | |    | ||| |     ||    |  || ||| |   || |  |  |  |  |||  |        
GAATTAACTCCAGCACCCGTGTTTCCTCTCATCGTTGGAGTTTCAGTGATTGCTCTTTTTATCAGTATGCCAAGgtaaacctactcatttcctg-acttttaagtactcgtgtataatggttgctattctacctctaattctaattctaattctaattatttcttattaatttctgtcttatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87016323|gb|CI271734.1|CI271734
EST:     CCTCTTATTGTCGGAGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAG                         GCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTCTGC
genomic: CCTCTTATTGTCGGAGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAGgttcctgctc ... atgcttttagGCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTCTGC
EST: gi|4715027|gb|AU056144.1|AU056144
EST:     CCTCTTATTGTCGGAGTTNCCGTGATTCCATTGGTCATCAGCATGCCAAG                         GCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTCNTG
genomic: CCTCTTATTGTCGGAGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAGgttcctgctc ... atgcttttagGCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTC-TG
EST: gi|88291400|gb|CI529990.1|CI529990
EST:     GGAGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAG                         GCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTCTGC
genomic: GGAGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAGgttcctgctc ... atgcttttagGCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTCTGC
EST: gi|86478429|gb|CI121062.1|CI121062
EST:     CCTCTTATTGTCGGAGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAG                         GCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTCTGC
genomic: CCTCTTATTGTCGGAGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAGgttcctgctc ... atgcttttagGCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTCTGC
EST: gi|88995505|gb|CI022828.1|CI022828
EST:     CCTCTTATTGTCGGAGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAG                         GCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTCTGC
genomic: CCTCTTATTGTCGGAGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAGgttcctgctc ... atgcttttagGCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTCTGC
EST: gi|89183106|gb|CI003170.1|CI003170
EST:     CCTCTTATTGTCGGAGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAG                         GCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTCTGC
genomic: CCTCTTATTGTCGGAGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAGgttcctgctc ... atgcttttagGCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTCTGC
EST: gi|88447163|gb|CI531406.1|CI531406
EST:     CGGAGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAG                         GCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTCTGC
genomic: CGGAGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAGgttcctgctc ... atgcttttagGCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTCTGC
EST: gi|86480905|gb|CI123538.1|CI123538
EST:     CCTCTTATTGTCGGAGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAG                         GCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTCTGC
genomic: CCTCTTATTGTCGGAGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAGgttcctgctc ... atgcttttagGCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTCTGC
EST: gi|27547001|gb|CA765154.2|CA765154
EST:     CCTCTTATTGTCGGAGTTTCTGTGATTGCATTGGTCATCAGCATGCCAAG                         GTTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTCTGC
genomic: CCTCTTATTGTCGGAGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAGgttcctgctc ... atgcttttagGCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTCTGC
EST: gi|88508413|gb|CI435919.1|CI435919
EST:     CTCTTATTGTCGGAGGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAG                         GCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTCTGC
genomic: CTCTTATTGTCGGA-GTTTCCGTGATTGCATTGGTCATCAGCATGCCAAGgttcctgctc ... atgcttttagGCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTCTGC
EST: gi|88443093|gb|CI546665.1|CI546665
EST:     AGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAG                         GCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTCTNC
genomic: AGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAGgttcctgctc ... atgcttttagGCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTCTGC
EST: gi|88490324|gb|CI427596.1|CI427596
EST:     CCTCTTATTGTCGGAGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAG                         GCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTCTGC
genomic: CCTCTTATTGTCGGAGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAGgttcctgctc ... atgcttttagGCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTCTGC
EST: gi|86250806|gb|CI007669.1|CI007669
EST:     CCTCTTATTGTCGGAGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAG                         GCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTCTGC
genomic: CCTCTTATTGTCGGAGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAGgttcctgctc ... atgcttttagGCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTCTGC
EST: gi|88725754|gb|CI749013.1|CI749013
EST:     CCTCTTATTGTCGGAGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAG                         GCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTCTGC
genomic: CCTCTTATTGTCGGAGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAGgttcctgctc ... atgcttttagGCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTCTGC