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TAGATTTGAGTCAGAGATAGTTGAAGTTGACTTGGACAAGCAACCTCAGATTCATGTTGGTCCTCTTAAATATAAAACCGAAGAGCGACATCACAAACAGgtaatttcttacacaagcttgaacactgtgatataattttgtttacactgatttgcttatgttttctaaccttgaaatctaatgattaaatccataagtt...
species | Oryza sativa |
transcript | LOC_Os01g19470.1 |
intron # | 25 |
splice site | 5' |
intron type | U2 |
EST: TTCATGTTGGTCCTCTTAAATATAAAACCGAAGAGCGACATCACAAACAG GAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGAGTTTCCGTGATTEST: gi|4715027|gb|AU056144.1|AU056144
genomic: TTCATGTTGGTCCTCTTAAATATAAAACCGAAGAGCGACATCACAAACAGgtaatttctt ... tttcgtgcagGAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGAGTTTCCGTGATT
EST: CCATGTTGGTCCTCTTAAATATAAACCCGAAGANCGACATCACAAACCAG GAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGAGTTNCCGTGATEST: gi|88995505|gb|CI022828.1|CI022828
genomic: -CATGTTGGTCCTCTTAAATATAAAACCGAAGAGCGACATCACAAA-CAGgtaatttctt ... tttcgtgcagGAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGAGTTTCCGTGAT
EST: TTCATGTTGGTCCTCTTAAATATAAAACCGAAGAGCGACATCACAAACAG GAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGAGTTTCCGTGATTEST: gi|89183106|gb|CI003170.1|CI003170
genomic: TTCATGTTGGTCCTCTTAAATATAAAACCGAAGAGCGACATCACAAACAGgtaatttctt ... tttcgtgcagGAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGAGTTTCCGTGATT
EST: AAAACCGAAGAGCGACATCACAAACAG GAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGAGTTTCCGTGATTEST: gi|86480905|gb|CI123538.1|CI123538
genomic: AAAACCGAAGAGCGACATCACAAACAGgtaatttctt ... tttcgtgcagGAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGAGTTTCCGTGATT
EST: TTCATGTTGGTCCTCTTAAATATAAAACCGAAGAGCGACATCACAAACAG GAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGAGTTTCCGTGATTEST: gi|27547001|gb|CA765154.2|CA765154
genomic: TTCATGTTGGTCCTCTTAAATATAAAACCGAAGAGCGACATCACAAACAGgtaatttctt ... tttcgtgcagGAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGAGTTTCCGTGATT
EST: TTCATGTTGCTCCTCTTAAATATAAAACCGAAGAGCGACATCACAAACAG GAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGAGTTTCTGTGATTEST: gi|88508413|gb|CI435919.1|CI435919
genomic: TTCATGTTGGTCCTCTTAAATATAAAACCGAAGAGCGACATCACAAACAGgtaatttctt ... tttcgtgcagGAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGAGTTTCCGTGATT
EST: TCATGTTGGTCCTCTTAGATATAAAACCGAAGAGGCGACATCACAGACAG GAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGAGGTTTCCGTGATEST: gi|88490324|gb|CI427596.1|CI427596
genomic: TCATGTTGGTCCTCTTAAATATAAAACCGAAGA-GCGACATCACAAACAGgtaatttctt ... tttcgtgcagGAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGA-GTTTCCGTGAT
EST: CGAAGAGCGACATCACAAACAG GAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGAGTTTCCGTGATTEST: gi|38482233|gb|CF966283.1|CF966283
genomic: CGAAGAGCGACATCACAAACAGgtaatttctt ... tttcgtgcagGAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGAGTTTCCGTGATT
EST: TTCATGTTGGTCCTCTTAAATATAAAACCGAAGAGCGACATCACAAACAG GAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGAGTTTCTGTGATTEST: gi|86250806|gb|CI007669.1|CI007669
genomic: TTCATGTTGGTCCTCTTAAATATAAAACCGAAGAGCGACATCACAAACAGgtaatttctt ... tttcgtgcagGAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGAGTTTCCGTGATT
EST: CGACATCACAAACAG GAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGAGTTTCCGTGATTEST: gi|88725754|gb|CI749013.1|CI749013
genomic: CGACATCACAAACAGgtaatttctt ... tttcgtgcagGAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGAGTTTCCGTGATT
EST: GAAGAGCGACATCACAAACAG GAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGAGTTTCCGTGATT
genomic: GAAGAGCGACATCACAAACAGgtaatttctt ... tttcgtgcagGAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGAGTTTCCGTGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGATTTGAGTCAGAGATAGTTGAAGTTGACTTGGACAAGCAACCTCAGATTCATGTTGGTCCTCTTAAATATAAAACCGAAGAGCGACATCACAAACAGgtaatttcttacacaagcttgaacactgtgatataattttgtttacactgatttgcttatgttttctaaccttgaaatctaatgattaaatccataagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA