1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
GATCTGCATAGAAACTCCTGGGCAACATGAGCTTCATTTAATTAATTCCTGCATTTCCTTTGGGAGCTCGCCAGTGGTATTTGATACAAAGAATCCAATGgtgagctgcttgcataccttgtgcttacgtttttcaatgctgcgttgagtttcacacactaatgctaaaatgttctctcttttag
species | Oryza sativa |
transcript | LOC_Os01g19470.1 |
intron # | 18 |
splice site | 5' |
intron type | U2 |
EST: GCATTTCCTTTGGGAGCTCGCCAGTGGTATTTGATACAAAGAATCCAATG CCTGTTCATATCAGTGCAAAGAAATATCTTGTAAGAGGTGAACTCCATGTGEST: gi|58663654|gb|CK052340.1|CK052340
genomic: GCATTTCCTTTGGGAGCTCGCCAGTGGTATTTGATACAAAGAATCCAATGgtgagctgct ... tctcttttagCCTGTTCATATCAGTGCAAAGAAATATCTTGTAAGAGGTGAACTCCATGTG
EST: GCATTTCCTTTGGGAGCTCGCCAGTGGTATTTGATACAAAGAATCCAATG CCTGTTCATATCAGTGCAAAGAAATATCTTGTAAGAGGTGAACTCCATGTGEST: gi|58656580|gb|CK045260.1|CK045260
genomic: GCATTTCCTTTGGGAGCTCGCCAGTGGTATTTGATACAAAGAATCCAATGgtgagctgct ... tctcttttagCCTGTTCATATCAGTGCAAAGAAATATCTTGTAAGAGGTGAACTCCATGTG
EST: CGCCAGTGGTATTTGATACAAAGAATCCAATG CCTGTTCATATCAGTGCAAAGAAATATCTTGTAAGAGGTGAACTCCATGTGEST: gi|58688569|gb|CK077256.1|CK077256
genomic: CGCCAGTGGTATTTGATACAAAGAATCCAATGgtgagctgct ... tctcttttagCCTGTTCATATCAGTGCAAAGAAATATCTTGTAAGAGGTGAACTCCATGTG
EST: GCATTTCCTTTGGGAGCTCGCCAGTGGTATTTGATACAAAGAATCCAATG CCTGTTCATATCAGTGCAAAGAAATATCTTGTAAGAGGTGAACTCCATGTGEST: gi|58670760|gb|CK059446.1|CK059446
genomic: GCATTTCCTTTGGGAGCTCGCCAGTGGTATTTGATACAAAGAATCCAATGgtgagctgct ... tctcttttagCCTGTTCATATCAGTGCAAAGAAATATCTTGTAAGAGGTGAACTCCATGTG
EST: GCATTTCCTTTGGGAGCTCGCCAGTGGTATTTGATACAAAGAATCCAATG CCTGTTCATATCAGTGCAAAGAAATATCTTGTAAGAGGTGAACTCCATGTG
genomic: GCATTTCCTTTGGGAGCTCGCCAGTGGTATTTGATACAAAGAATCCAATGgtgagctgct ... tctcttttagCCTGTTCATATCAGTGCAAAGAAATATCTTGTAAGAGGTGAACTCCATGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCTGCATAGAAACTCCTGGGCAACATGAGCTTCATTTAATTAATTCCTGCATTTCCTTTGGGAGCTCGCCAGTGGTATTTGATACAAAGAATCCAATGgtgagctgcttgcataccttgtgcttacgtttttcaatgctgcgttgagtttcacacactaatgctaaaatgttctctcttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA