Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATATGTTCAACAATTGGAGAATAGCAGGCTAAAGCTTACACAACTAGAACAAGAATTGCAACGAGCTCGTCAGCAGgtttgcttctattgtgtctcgctgttttgagctctggctgcaagagttcatttcaagtaggcttacgggaatttctcacag

Basic information

species Oryza sativa
transcript LOC_Os01g17260.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g17260.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G030280_T02 (Zea mays), 5'ss of exon 5
GCATATGTTCAACAATTGGAGAATAGCAGGCTAAAGCTTACACAACTAGAACAAGAATTGCAACGAGCTCGTCAGCAGgtttgcttctattgtgtctcgctgttttgagctctg-gctgcaagagttcatttcaagtaggcttacgggaatttctcacag--
|||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||  ||||| |||||||||||||||||  || ||||    | ||||  |||  ||| ||| |    |     | | || ||||  ||||| |  | |||||| ||   
GCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAACTTACCCAACTAGAGCAAGAGCTGCAAAGAGCTCGTCAGCAGgtt-actcctatgtcatgtcgcattttacagccctgtgtcctattgactaaattgaagtttgcttaagatattttctctcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88392088|gb|CI683916.1|CI683916
EST:     GGCTAAAGCTTACACAACTAGAACAAGAATTGCAACGAGCTCGTCAGCAG                         GGCATTTTTATATCCAGCTCAGTGGACCAGACTCATTCCATGAGTGGAAAT
genomic: GGCTAAAGCTTACACAACTAGAACAAGAATTGCAACGAGCTCGTCAGCAGgtttgcttct ... tttctcacagGGCATTTTTATATCCAGCTCAGTGGACCAGACTCATTCCATGAGTGGAAAT
EST: gi|88591033|gb|CI707939.1|CI707939
EST:     GGCTAAAGCTTACACAACTAGAACAAGAATTGCAACGAGCTCGTCAGCAG                         GGCATTTTTATATCCAGCTCAGTGGACCAGACTCATTCCATGAGTGGAAAT
genomic: GGCTAAAGCTTACACAACTAGAACAAGAATTGCAACGAGCTCGTCAGCAGgtttgcttct ... tttctcacagGGCATTTTTATATCCAGCTCAGTGGACCAGACTCATTCCATGAGTGGAAAT
EST: gi|88328466|gb|CI676674.1|CI676674
EST:     GGCTAAAGCTTACACAACTAGAACAAGAATTGCAACGAGCTCGTCAGCAG                         GGCATTTTTATATCCAGCTCAGTGGACCAGACTCATTCCATGAGTGGAAAT
genomic: GGCTAAAGCTTACACAACTAGAACAAGAATTGCAACGAGCTCGTCAGCAGgtttgcttct ... tttctcacagGGCATTTTTATATCCAGCTCAGTGGACCAGACTCATTCCATGAGTGGAAAT