Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttatgtaaaaagggaaaatggttgatgcaagttattcttttcagcttttgtacaaattttcatggtcatgatgcaatattgaataacttcatctttttagGCATATGTTCAACAATTGGAGAATAGCAGGCTAAAGCTTACACAACTAGAACAAGAATTGCAACGAGCTCGTCAGCAG

Basic information

species Oryza sativa
transcript LOC_Os01g17260.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g17260.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G030280_T02 (Zea mays), 3'ss of exon 4
ttatgtaaaaagggaaaatggttgatgcaagttattcttttcagcttttg-tacaaatt-ttcatggtcatga-tgcaatattga---ataacttcatcttttta--gGCATATGTTCAACAATTGGAGAATAGCAGGCTAAAGCTTACACAACTAGAACAAGAATTGCAACGAGCTCGTCAGCAG
        |  |   ||     ||  |||||     || |  |  || || |  | |||  | |||| ||| | ||   |||| |    ||| ||     |||||  ||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||  ||||| ||||||||||||||
------ggattgcagaagcaagtg--gcaaggacccctctaaaatttctgatgtagattgctaatggacattactgtggtattaattggtaatttggctattttacagGCATATGTTCAACAGTTGGAGAATAGCAGGCTAAAACTTACCCAACTAGAGCAAGAGCTGCAAAGAGCTCGTCAGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgtacaaattttcatggtcatgatgcaatattgaataacttcatctttttagGCATATGTTCAACAATTGGAGAATAGCAGGCTAAAGCTTACACAACTAGAACAAGAATTGCAACGAGCTCGTCAGCAG
                                   gaataac  putative branch site (score: 2)
                                         cttcatcttttt  CT-rich tract
                             aatattgaataactt  TA-rich tract