1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtttgcttctattgtgtctcgctgttttgagctctggctgcaagagttcatttcaagtaggcttacgggaatttctcacagGGCATTTTTATATCCAGCTCAGTGGACCAGACTCATTCCATGAGTGGAAATG
species | Oryza sativa |
transcript | LOC_Os01g17260.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGCTAAAGCTTACACAACTAGAACAAGAATTGCAACGAGCTCGTCAGCAG GGCATTTTTATATCCAGCTCAGTGGACCAGACTCATTCCATGAGTGGAAATEST: gi|88591033|gb|CI707939.1|CI707939
genomic: GGCTAAAGCTTACACAACTAGAACAAGAATTGCAACGAGCTCGTCAGCAGgtttgcttct ... tttctcacagGGCATTTTTATATCCAGCTCAGTGGACCAGACTCATTCCATGAGTGGAAAT
EST: GGCTAAAGCTTACACAACTAGAACAAGAATTGCAACGAGCTCGTCAGCAG GGCATTTTTATATCCAGCTCAGTGGACCAGACTCATTCCATGAGTGGAAATEST: gi|88328466|gb|CI676674.1|CI676674
genomic: GGCTAAAGCTTACACAACTAGAACAAGAATTGCAACGAGCTCGTCAGCAGgtttgcttct ... tttctcacagGGCATTTTTATATCCAGCTCAGTGGACCAGACTCATTCCATGAGTGGAAAT
EST: GGCTAAAGCTTACACAACTAGAACAAGAATTGCAACGAGCTCGTCAGCAG GGCATTTTTATATCCAGCTCAGTGGACCAGACTCATTCCATGAGTGGAAAT
genomic: GGCTAAAGCTTACACAACTAGAACAAGAATTGCAACGAGCTCGTCAGCAGgtttgcttct ... tttctcacagGGCATTTTTATATCCAGCTCAGTGGACCAGACTCATTCCATGAGTGGAAAT
ttgagctctggctgcaagagttcatttcaagtaggcttacgggaatttctcacagGGCATTTTTATATCCAGCTCAGTGGACCAGACTCATTCCATGAGTGGAAATG
ggcttac putative branch site (score: 3)
tttctcac putative PPT
ttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcttctattgtgtctcgctgttttgagctctggctgcaagagttcatttcaagtaggcttacgggaatttctcacagGGCATTTTTATATCCAGCTCAGTGGACCAGACTCATTCCATGAGTGGAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA