1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AGGGGCGGCGTGATCAGGTGCAGGGACGGATCGGGGAGGTTCGCCAGGGACAAGCTCAACGACGACTTCTGCGACTGCCCCGACGGCACCGACGAGCCAGgttgcttccttgctctcgcctgaaaaagattatccctttttttttgccttagctttttgcggaggtgttctggttttaggttctcgtgtttgtgctagtagctcgaatctacttactgtaggcaatctaagagagctgtttaatcgaattgtgtttactttttgccttggcgcag
species | Oryza sativa |
transcript | LOC_Os01g16970.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAAGCTCAACGACGACTTCTGCGACTGCCCCGACGGCACCGACGAGCCAG GGACATCGGCGTGCCCGGAGGGGAAGTTCTACTGCCAGAATGCTGGGCATTEST: gi|86423164|gb|CI060737.1|CI060737
genomic: CAAGCTCAACGACGACTTCTGCGACTGCCCCGACGGCACCGACGAGCCAGgttgcttcct ... cttggcgcagGGACATCGGCGTGCCCGGAGGGGAAGTTCTACTGCCAGAATGCTGGGCATT
EST: CAAGCTCAACGACGACTTCTGCGACTGCCCCGACGGCACCGACGAGCCAG GGACATCGGCGTGCCCGGAGGGGAAGTTCTACTGCCAGAATGCTGGGCATTEST: gi|88212111|gb|CI211751.1|CI211751
genomic: CAAGCTCAACGACGACTTCTGCGACTGCCCCGACGGCACCGACGAGCCAGgttgcttcct ... cttggcgcagGGACATCGGCGTGCCCGGAGGGGAAGTTCTACTGCCAGAATGCTGGGCATT
EST: CAAGCTCAACGACGACTTCTGCGACTGCCCCGACGGCACCGACGAGCCAG GGACATCGGCGTGCCCGGAGGGGAGGTTCTACTGCCAGAATGCTGGGCATTEST: gi|88903472|gb|CI089010.1|CI089010
genomic: CAAGCTCAACGACGACTTCTGCGACTGCCCCGACGGCACCGACGAGCCAGgttgcttcct ... cttggcgcagGGACATCGGCGTGCCCGGAGGGGAAGTTCTACTGCCAGAATGCTGGGCATT
EST: CAAGCTCAACGACGACTTCTGCGACTGCCCCGACGGCACCGACGAGCCAG GGAAATCGGCGTGCCCGGAGGGGAAGTTCTACTGCCAGAATGCTGGGCATT
genomic: CAAGCTCAACGACGACTTCTGCGACTGCCCCGACGGCACCGACGAGCCAGgttgcttcct ... cttggcgcagGGACATCGGCGTGCCCGGAGGGGAAGTTCTACTGCCAGAATGCTGGGCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGGCGGCGTGATCAGGTGCAGGGACGGATCGGGGAGGTTCGCCAGGGACAAGCTCAACGACGACTTCTGCGACTGCCCCGACGGCACCGACGAGCCAGgttgcttccttgctctcgcctgaaaaagattatccctttttttttgccttagctttttgcggaggtgttctggttttaggttctcgtgtttgtgctagtagctcgaatctacttactgtaggcaatctaagagagctgtttaatcgaattgtgtttactttttgccttggcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA