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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTCTCGTGTTCGGAAGGAGTATGATGATGCAAGCTCAAAGCTGTCCAAGATTCAGTCTAGGATATCCACTCTGACAGATAAGCTAAAACACGACTTTGgtaagtcagttgaaagtttgtttacttggtgattgaatgcacaagtcactcgtatattcttgttagctatataatggccttgcaagtttatatatggcag...

Basic information

species Oryza sativa
transcript LOC_Os01g16970.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g16970.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G052875_T02 (Zea mays), 5'ss of exon 10
GCTTCTCGTGTTCGGAAGGAGTATGATGATGCAAGCTCAAAGCTGTCCAAGATTCAGTCTAGGATATCCACTCTGACAGATAAGCTAAAACACGACTTTGgtaagtcagtt-gaaagtttgtttacttggtgattgaatgcacaagtcactcgtatattcttgttagctatataatggccttgcaagtttatatatggcag--
|||||||||||||| ||||||||||| ||||| | ||||||||| || || |||||||||| |||||||| | |  | || ||||||||||| || |||||||||| | || |||| | |||| |||  ||| |||  |||   | | | |  |||| | |||||   | ||       | |  ||  || | | ||   |  
GCTTCTCGTGTTCGTAAGGAGTATGACGATGCCAACTCAAAGCTTTCAAAAATTCAGTCTAAGATATCCAATTTAGCTGAGAAGCTAAAACATGATTTTGgtaagttaatttgaaactctgttcactatgtggttggctgccataatgatttttatagt-ttgttgtttgtacttcacacct--aaagttgtttctgattgtc

upper sequence: LOC_Os01g16970.1 (Oryza sativa), 5'ss of exon 10
lower sequence: AC213600.3_FGT002 (Zea mays), 5'ss of exon 10
GCTTCTCGTGTTCGGAAGGAGTATGATGATGCAAGCTCAAAGCTGTCCAAGATTCAGTCTAGGATATCCACTCTGACAGATAAGCTAAAACACGACTTTGgtaagtc--agttgaaagtttgtttacttggtgattgaatgcacaagtcactcgtatattct-tgttagctatataatggccttgcaagtttatatatggcag
||||||| |||||| ||||||||||||||||| ||||||||||| || || |||||||||| |||||||| |||  | || ||||||||||| || ||||||||||   | |||||| | |||| |||   ||||||     | ||   | |   ||| | | |  |    |  | | |    ||   || |  || |     
GCTTCTCATGTTCGTAAGGAGTATGATGATGCTAGCTCAAAGCTTTCAAAAATTCAGTCTAAGATATCCAGTCTAGCTGAGAAGCTAAAACATGATTTTGgtaagtataatttgaaattctgttcactatttgattggtgctataatgaagtttcataatttgtactttaaacctgaagtttctgattgtctg-atgtaat--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38481101|gb|CF965190.1|CF965190
EST:     GATTCAGTCTAGGATATCCACTCTGACAGATAAGCTAAAACACGACTTTG                         GTAAGGAGAAGGAGTTCTATTACTTTTATGATCAGGGCTTTGAGAGCAAGG
genomic: GATTCAGTCTAGGATATCCACTCTGACAGATAAGCTAAAACACGACTTTGgtaagtcagt ... ttcttattagGTAAGGAGAAGGAGTTCTATTACTTTTATGATCAGTGCTTTGAGAGCAAGG
EST: gi|88371457|gb|CI602635.1|CI602635
EST:     GATTCAGTCTAGGATATCCACTCTGACAGATAAGCTAAAACACGACTTTG                         GTAAGGAGAAGGAGTTCTATTACTTTTATGATCAGTGCTTTGAGAGCAAGG
genomic: GATTCAGTCTAGGATATCCACTCTGACAGATAAGCTAAAACACGACTTTGgtaagtcagt ... ttcttattagGTAAGGAGAAGGAGTTCTATTACTTTTATGATCAGTGCTTTGAGAGCAAGG
EST: gi|58589761|gb|CF988069.1|CF988069
EST:     GATTCAGTCTAGGATATCCACTCTGACAGATAAGCTAAAACACGACTTTG                         GTAAGGAGAAGGAGTTCTATTACTTTTATGATCAGTGCTTTGAGAGCAAGG
genomic: GATTCAGTCTAGGATATCCACTCTGACAGATAAGCTAAAACACGACTTTGgtaagtcagt ... ttcttattagGTAAGGAGAAGGAGTTCTATTACTTTTATGATCAGTGCTTTGAGAGCAAGG