1 5' 3' | 2 5' 3' | 3 5' 3' |
GCAAACAAGAACCTTCCTCCACCAAATGCGACACTGCATCGTCTTGTGAAATTCTTTGAAAGGCAAGGACTGGATAAGGTGGACCTTGTGGCACTGTCAGgtattgaattaattccacctcttcagtgttgaaactagattttttttgaggtaatgtagtaaaaaaaaatccggcggaataaaatagatttgtttgtaca...
species | Oryza sativa |
transcript | LOC_Os01g15810.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATTCTTTGAAAGGCAAGGACTGGATAAGGTGGACCTTGTGGCACTGTCAG GAAGCCACACCATTGGAATGGCCAGATGTGTGAGCTTCAAGCAGAGGCTCTEST: gi|117229871|gb|CT846321.1|CT846321
genomic: ATTCTTTGAAAGGCAAGGACTGGATAAGGTGGACCTTGTGGCACTGTCAGgtattgaatt ... gcattgacagGAAGCCACACCATTGGAATGGCCAGATGTGTGAGCTTCAAGCAGAGGCTCT
EST: ATTCTTTGAAAGGCAAGGACTGGATAAGGTGGACCTTGTGGCACTGTCAG GAAGCCACACCATTGGAATGGGCAGATGTGTGAGCTTCAAGCAGAGGCTCT
genomic: ATTCTTTGAAAGGCAAGGACTGGATAAGGTGGACCTTGTGGCACTGTCAGgtattgaatt ... gcattgacagGAAGCCACACCATTGGAATGGCCAGATGTGTGAGCTTCAAGCAGAGGCTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAACAAGAACCTTCCTCCACCAAATGCGACACTGCATCGTCTTGTGAAATTCTTTGAAAGGCAAGGACTGGATAAGGTGGACCTTGTGGCACTGTCAGgtattgaattaattccacctcttcagtgttgaaactagattttttttgaggtaatgtagtaaaaaaaaatccggcggaataaaatagatttgtttgtaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccacctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccggcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa