1 5' 3' | 2 5' 3' | 3 5' 3' |
...taaaatgctaatccaaaccatcctcctgcattaacataattgaaacaactaataatatttttctcaccaaacaaatacatacatttttctgcattgacagGAAGCCACACCATTGGAATGGCCAGATGTGTGAGCTTCAAGCAGAGGCTCTACAACCAGCACAGAGACAACCAGCCTGACAAAACGCTAGAGAGAATGTT
species | Oryza sativa |
transcript | LOC_Os01g15810.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTCTTTGAAAGGCAAGGACTGGATAAGGTGGACCTTGTGGCACTGTCAG GAAGCCACACCATTGGAATGGCCAGATGTGTGAGCTTCAAGCAGAGGCTCTEST: gi|117229871|gb|CT846321.1|CT846321
genomic: ATTCTTTGAAAGGCAAGGACTGGATAAGGTGGACCTTGTGGCACTGTCAGgtattgaatt ... gcattgacagGAAGCCACACCATTGGAATGGCCAGATGTGTGAGCTTCAAGCAGAGGCTCT
EST: ATTCTTTGAAAGGCAAGGACTGGATAAGGTGGACCTTGTGGCACTGTCAG GAAGCCACACCATTGGAATGGGCAGATGTGTGAGCTTCAAGCAGAGGCTCT
genomic: ATTCTTTGAAAGGCAAGGACTGGATAAGGTGGACCTTGTGGCACTGTCAGgtattgaatt ... gcattgacagGAAGCCACACCATTGGAATGGCCAGATGTGTGAGCTTCAAGCAGAGGCTCT
caactaataatatttttctcaccaaacaaatacatacatttttctgcattgacagGAAGCCACACCATTGGAATGGCCAGATGTGTGAGCTTCAAGCAGAGGCTCTACAACCAGCACAGAGACAACCAGCCTGACAAAACGCTAGAGAGAATGTT
ttctcac putative branch site (score: 2)
tttttctgc putative PPT
aataatatttttctca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaaatgctaatccaaaccatcctcctgcattaacataattgaaacaactaataatatttttctcaccaaacaaatacatacatttttctgcattgacagGAAGCCACACCATTGGAATGGCCAGATGTGTGAGCTTCAAGCAGAGGCTCTACAACCAGCACAGAGACAACCAGCCTGACAAAACGCTAGAGAGAATGTT
- - -tgctaat
- - - - - - - aaaccat
- - - - - - - - - - - ctcctgc
- - - - - - - - - - - - - - - - - - - - - - -caactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catacat