1 5' 3' | 2 5' 3' | 3 5' 3' |
AGTTATAGACGAGATCAAGGCTGCACTTGAAGAAGCTTGTCCACACACAGTCTCTTGTGCTGACACCATTGCCCTAGCTGCGAGAGGTTCAACAGTTCTGgtaaacatctctgctcttaaaattaaaaaaaaaaacttcattcatctgtttaaaatatagacttcattctttttcaagagaacacaataagagaatttct...
species | Oryza sativa |
transcript | LOC_Os01g15810.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCTGCGAGAGGTTCAACAGTTCTG AGCGGTGGCCCATACTGGGAACTTCCACTAGGAAGGAAGGATTCAAAGGCAEST: gi|117229871|gb|CT846321.1|CT846321
genomic: GCTGCGAGAGGTTCAACAGTTCTGgtaaacatct ... ctcatgacagAGCGGTGGCCCATACTGGGAACTTCCACTAGGAAGGAAGGATTCAAAGGCA
EST: TCTCTTGTGCTGACACCATTGCCCTAGCTGCCAGAGGTTCAACAGTTCTG AGCGGTGGCCCATACTGGGAACTTCCACTAGGAAGGAAGGATTCAAAGGCAEST: gi|25799202|gb|CA755163.1|CA755163
genomic: TCTCTTGTGCTGACACCATTGCCCTAGCTGCGAGAGGTTCAACAGTTCTGgtaaacatct ... ctcatgacagAGCGGTGGCCCATACTGGGAACTTCCACTAGGAAGGAAGGATTCAAAGGCA
EST: TCTCTTGTGCTGACACCATTGCCCTAGCTGCGAGAGGTTCAACAGTTCTG AGCGGTGGCCCATACTGGGAACTTCCACTAGGAAGGAAGGATTCANAGGCA
genomic: TCTCTTGTGCTGACACCATTGCCCTAGCTGCGAGAGGTTCAACAGTTCTGgtaaacatct ... ctcatgacagAGCGGTGGCCCATACTGGGAACTTCCACTAGGAAGGAAGGATTCAAAGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTATAGACGAGATCAAGGCTGCACTTGAAGAAGCTTGTCCACACACAGTCTCTTGTGCTGACACCATTGCCCTAGCTGCGAGAGGTTCAACAGTTCTGgtaaacatctctgctcttaaaattaaaaaaaaaaacttcattcatctgtttaaaatatagacttcattctttttcaagagaacacaataagagaatttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa