1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATGGCATTTTTGGAGCAATGATGAAGgtacctctgaataaacatatgctgtaattgcctttttgtgctctattaccctttaagatgtaaattcaatacttttgcag
species | Oryza sativa |
transcript | LOC_Os01g14040.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGATGGCATTTTTGGAGCAATGATGAAG GTTTCTTTAGTGAACGATGGCCCTGTAACAATGCAAGTTGACTCATCCTCAEST: gi|86854057|gb|CI252048.1|CI252048
genomic: AGATGGCATTTTTGGAGCAATGATGAAGgtacctctga ... acttttgcagGTTTCTTTAGTGAACGATGGCCCTGTAACAATGCAAGTTGACTCATCCTCA
EST: ATGGCATTTTTGGAGCAATGATGAAG GTTTCTTTAGTGAACGATGGCCCTGTAACAATGCAAGTTGACTCATCCTCAEST: gi|88838231|gb|CI373591.1|CI373591
genomic: ATGGCATTTTTGGAGCAATGATGAAGgtacctctga ... acttttgcagGTTTCTTTAGTGAACGATGGCCCTGTAACAATGCAAGTTGACTCATCCTCA
EST: TTTGGAGCAATGATGAAG GTTTCTTTAGTGAACGATGGCCCTGTAACAATGCAAGTTGACTCATCCTCAEST: gi|58690528|gb|CK079215.1|CK079215
genomic: TTTGGAGCAATGATGAAGgtacctctga ... acttttgcagGTTTCTTTAGTGAACGATGGCCCTGTAACAATGCAAGTTGACTCATCCTCA
EST: ATGGCATTTTTGGAGCAATGATGAAG GTTTCTTTAGTGAACGATGGCCCTGTAACAATGCAAGTTGACTCATCCTCA
genomic: ATGGCATTTTTGGAGCAATGATGAAGgtacctctga ... acttttgcagGTTTCTTTAGTGAACGATGGCCCTGTAACAATGCAAGTTGACTCATCCTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGCATTTTTGGAGCAATGATGAAGgtacctctgaataaacatatgctgtaattgcctttttgtgctctattaccctttaagatgtaaattcaatacttttgcag
- - - - TTGGAG
- - - - - GGAGCA