1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGCGCCGCACGCGAAGCCCGGAGATCCGGCTGCGGCGGAGGCGAGAAGGAAGAGGGAGATGAGGGCCGTGGTGCAGCGTGTCCTCTCGGCAAGCGTCGAGgtgagcgggttcccctctcccactcgctagctaggaggaggaggcgagcggctgattcctgattggttggttcccgtgggttttttggttgcag
species | Oryza sativa |
transcript | LOC_Os01g14040.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGAGGGAGATGAGGGCCGTGGTGCAGCGTGTCCTCTCGGCAAGCGTCGAG GTGGAGGGGCGGGTGGTGTCGGCGATTGGCCCCGGCCTCCTCGTCCTTGTCEST: gi|88692898|gb|CI736473.1|CI736473
genomic: AGAGGGAGATGAGGGCCGTGGTGCAGCGTGTCCTCTCGGCAAGCGTCGAGgtgagcgggt ... ttggttgcagGTGGAGGGGCGGGTGGTGTCGGCGATTGGCCCCGGCCTCCTCGTCCTTGTC
EST: AGAGGGAGATGAGGGCCGTGGTGCAGCGTGTCCTCTCGGCAAGCGTCGAG GTGGAGGGGCGGGTGGTGTCGGCGATTGGCCCCGGCCTCCTCGTCCTTGTCEST: gi|58690528|gb|CK079215.1|CK079215
genomic: AGAGGGAGATGAGGGCCGTGGTGCAGCGTGTCCTCTCGGCAAGCGTCGAGgtgagcgggt ... ttggttgcagGTGGAGGGGCGGGTGGTGTCGGCGATTGGCCCCGGCCTCCTCGTCCTTGTC
EST: AGAGGGAGATGAGGGCCGTGGTGCAGCGTGTCCTCTCGGCAAGCGTCGAG GTGGAGGGGCGGGTGGTGTCGGCGATTGGCCCCGGCCTCCTCGTCCTTGTCEST: gi|88422041|gb|CI611661.1|CI611661
genomic: AGAGGGAGATGAGGGCCGTGGTGCAGCGTGTCCTCTCGGCAAGCGTCGAGgtgagcgggt ... ttggttgcagGTGGAGGGGCGGGTGGTGTCGGCGATTGGCCCCGGCCTCCTCGTCCTTGTC
EST: AGAGGGAGATGAGGGCCGTGGTGCAGCGTGTCCTCTCGGCAAGCGTCGAG GTGGAGGGGCGGGTGGTGTCGGCGATTGGCCCCGGCCTCCTCGTCCTTGTC
genomic: AGAGGGAGATGAGGGCCGTGGTGCAGCGTGTCCTCTCGGCAAGCGTCGAGgtgagcgggt ... ttggttgcagGTGGAGGGGCGGGTGGTGTCGGCGATTGGCCCCGGCCTCCTCGTCCTTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGCCGCACGCGAAGCCCGGAGATCCGGCTGCGGCGGAGGCGAGAAGGAAGAGGGAGATGAGGGCCGTGGTGCAGCGTGTCCTCTCGGCAAGCGTCGAGgtgagcgggttcccctctcccactcgctagctaggaggaggaggcgagcggctgattcctgattggttggttcccgtgggttttttggttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG