1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttgcgtttcctgcaattttgtttatgctcagatcttcagtaaatgtatgatgtatccttgtgttatattgtcactctcatactaacatgaccttacgcagTTGTCGGAAGGTTCTGAACATGAGGCTATTTCCTAATGAGAAGACTGAAAAGGCATGGGATCAAAGT
species | Oryza sativa |
transcript | LOC_Os01g14040.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCCTTGTCGGCGTCCACGAGGCCGACACCGACGCCGACGCTGACTACAT TTGTCGGAAGGTTCTGAACATGAGGCTATTTCCTAATGAGAAGACTGAAAAEST: gi|88692898|gb|CI736473.1|CI736473
genomic: GTCCTTGTCGGCGTCCACGAGGCCGACACCGACGCCGACGCTGACTACATgtgtgtgccc ... ccttacgcagTTGTCGGAAGGTTCTGAACATGAGGCTATTTCCTAATGAGAAGACTGAAAA
EST: GTCCTTGTCGGCGTCCACGAGGCCGACACCGACGCCGACGCTGACTACAT TTGTCGGAAGGTTCTGAACATGAGGCTATTTCCTAATGAGAAGACTGAAAAEST: gi|86854057|gb|CI252048.1|CI252048
genomic: GTCCTTGTCGGCGTCCACGAGGCCGACACCGACGCCGACGCTGACTACATgtgtgtgccc ... ccttacgcagTTGTCGGAAGGTTCTGAACATGAGGCTATTTCCTAATGAGAAGACTGAAAA
EST: ACACCGACGCCGACGCTGACTACAT TTGTCGGAAGGTTCTGAACATGAGGCTATTTCCTAATGAGAAGACTGAAAAEST: gi|58690528|gb|CK079215.1|CK079215
genomic: ACACCGACGCCGACGCTGACTACATgtgtgtgccc ... ccttacgcagTTGTCGGAAGGTTCTGAACATGAGGCTATTTCCTAATGAGAAGACTGAAAA
EST: GTCCTTGTCGGCGTCCGCGAGGCCGACACCGACGCCGACGCTGACTACAT TTGTCGGAAGGTTCTGAACATGAGGCTATTTCCTAATGAGAAGACTGAAAAEST: gi|88422041|gb|CI611661.1|CI611661
genomic: GTCCTTGTCGGCGTCCACGAGGCCGACACCGACGCCGACGCTGACTACATgtgtgtgccc ... ccttacgcagTTGTCGGAAGGTTCTGAACATGAGGCTATTTCCTAATGAGAAGACTGAAAA
EST: GTCCTTGTCGGCGTCCACGAGGCCGACACCGACGCCGACGCTGACTACAT TTGTCGGAAGGTTCTGAACATGAGGCTATTTCCTAATGAGAAGACTGAAAA
genomic: GTCCTTGTCGGCGTCCACGAGGCCGACACCGACGCCGACGCTGACTACATgtgtgtgccc ... ccttacgcagTTGTCGGAAGGTTCTGAACATGAGGCTATTTCCTAATGAGAAGACTGAAAA
tatgatgtatccttgtgttatattgtcactctcatactaacatgaccttacgcagTTGTCGGAAGGTTCTGAACATGAGGCTATTTCCTAATGAGAAGACTGAAAAGGCATGGGATCAAAGT
tgttatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcgtttcctgcaattttgtttatgctcagatcttcagtaaatgtatgatgtatccttgtgttatattgtcactctcatactaacatgaccttacgcagTTGTCGGAAGGTTCTGAACATGAGGCTATTTCCTAATGAGAAGACTGAAAAGGCATGGGATCAAAGT
- - - -tcctgca
- - - - - - - - - - -ttatgct
- - - - - - - - - - - - - - - - - - - - - atgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - tgtatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actaaca