Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaacctttcaacctttcaaattctcttcttttgggtatcttgaacattcattctgttctccacattttttgtgccagGGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATCTGCACCGCGCTAGGTCTTCCTCCTGAGAG

Basic information

species Oryza sativa
transcript LOC_Os01g13570.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g13570.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G114550_T01 (Zea mays), 3'ss of exon 3
-------gtatgaacctttcaacctt-------tcaaattc-----------tcttcttttgggtatcttgaacattcattctgttctccacatttttt----gtgccagGGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATCTGCACCGCGCTAGGTCTTCCTCCTGAGAG
         || ||||||||   |||        ||  |||           |  || ||     | ||      || |  || || | | | |||||       | |||||||| ||  | ||||| ||||| |||||||| ||||||||||| ||||||||||| ||||| ||| | |||||||||||
ggataatacatcaacctttcctacttattgtctccaggttcagggtgtgccattgtccttgactgaactccggttttgaccctttttttctcttttttgtgggacgacagGGAGAGAACTTCTTGGTGGTTACACACAAATCCATTTTGCGCGCGCTCATCTGCACAGCGCTGGGTATACCTCCTGAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29688716|gb|CB684991.1|CB684991
EST:     AGTTATGGGGAACAGCAAGAGAAGCTTGGAAGGAAATCTTGCTTACTCCA                         GGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATC
genomic: AGTTATGGGGAACAGCAAGAGAAGCTTGGAAGGAAATCTTGCTTACTCCAgtatgaacct ... tttgtgccagGGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATC
EST: gi|88830391|gb|CI010591.1|CI010591
EST:     AGTTATGGGGAACAGCAAGAGAAGCTTGGAAGGAAATCTTGCTTACTCCA                         GGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATC
genomic: AGTTATGGGGAACAGCAAGAGAAGCTTGGAAGGAAATCTTGCTTACTCCAgtatgaacct ... tttgtgccagGGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATC
EST: gi|86841586|gb|CI336525.1|CI336525
EST:     AGTTATGGGGAACAGCAAGAGAAGCTTGGAAGGAAATCTTGCTTACTCCA                         GGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATC
genomic: AGTTATGGGGAACAGCAAGAGAAGCTTGGAAGGAAATCTTGCTTACTCCAgtatgaacct ... tttgtgccagGGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATC
EST: gi|88981933|gb|CI027510.1|CI027510
EST:     AGTTATGGGGAACAGCAAGAGAAGCTTGGAAGGAAATCTTGCTTACTCCA                         GGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATC
genomic: AGTTATGGGGAACAGCAAGAGAAGCTTGGAAGGAAATCTTGCTTACTCCAgtatgaacct ... tttgtgccagGGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATC
EST: gi|86896257|gb|CI330152.1|CI330152
EST:     AGTTATGGGGAACAGCAAGAGAAGCTTGGAAGGAAATCTTGCTTACTCCA                         GGAGAAAATATTTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATC
genomic: AGTTATGGGGAACAGCAAGAGAAGCTTGGAAGGAAATCTTGCTTACTCCAgtatgaacct ... tttgtgccagGGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATC
EST: gi|88214195|gb|CI214044.1|CI214044
EST:     AGTTATGGGGAACAGCAAGAGAAGCTTGGAAGGAAATCTTGCTTACTCCA                         GGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATC
genomic: AGTTATGGGGAACAGCAAGAGAAGCTTGGAAGGAAATCTTGCTTACTCCAgtatgaacct ... tttgtgccagGGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATC
EST: gi|88284411|gb|CI405857.1|CI405857
EST:     AGTTATGGGGAACAGCAAGAGAAGCTTGGAAGGAAATCTTGCTTACTCCA                         GGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATC
genomic: AGTTATGGGGAACAGCAAGAGAAGCTTGGAAGGAAATCTTGCTTACTCCAgtatgaacct ... tttgtgccagGGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATC
EST: gi|29663287|gb|CB659562.1|CB659562
EST:     AGTTATGGGGAACAGCAAGAGAAGCTTGGAAGGAAATCTTGCTTACTCCA                         GGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATC
genomic: AGTTATGGGGAACAGCAAGAGAAGCTTGGAAGGAAATCTTGCTTACTCCAgtatgaacct ... tttgtgccagGGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATC
EST: gi|88550003|gb|CI479943.1|CI479943
EST:     AGTTATGGGGAACAGCAAGAGAAGCTTGGAAGGAAATCTTGCTTACTCCA                         GGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATC
genomic: AGTTATGGGGAACAGCAAGAGAAGCTTGGAAGGAAATCTTGCTTACTCCAgtatgaacct ... tttgtgccagGGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATC
EST: gi|88284410|gb|CI405856.1|CI405856
EST:     AGTTATGGGGAACAGCAAGAGAAGCTTGGAAGGAAATCTTGCTTACTCCA                         GGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATC
genomic: AGTTATGGGGAACAGCAAGAGAAGCTTGGAAGGAAATCTTGCTTACTCCAgtatgaacct ... tttgtgccagGGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATC
EST: gi|88528739|gb|CI456998.1|CI456998
EST:     AGTTATGGGGAACAGCAAGAGAAGCTTGGAAGGAAATCTTGCTTACTCCA                         GGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATC
genomic: AGTTATGGGGAACAGCAAGAGAAGCTTGGAAGGAAATCTTGCTTACTCCAgtatgaacct ... tttgtgccagGGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATC
EST: gi|29663288|gb|CB659563.1|CB659563
EST:     AGTTATGGGGAACAGCAAGAGAAGCTTGGAAGGAAATCTTGCTTACTCCA                         GGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATC
genomic: AGTTATGGGGAACAGCAAGAGAAGCTTGGAAGGAAATCTTGCTTACTCCAgtatgaacct ... tttgtgccagGGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcttcttttgggtatcttgaacattcattctgttctccacattttttgtgccagGGAGAAAATATGTTGGTCGTTACTCACAAATCTATTTTGCGCGCACTCATCTGCACCGCGCTAGGTCTTCCTCCTGAGAG
                                 ttctccacatttttt  CT-rich tract
                                       acatttttt  TA-rich tract