1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCAACTGCCGAAATTATATGGAAGGGAAAGGAGGAGCCTCTTATATTTCTTGATTCTTTAAAAGAGGCTCATCTATTCTTCTTAGAGGGCATGACCAATGgtatgttgttgcttgtacaagccttcaatctcttcactcttactgtccatttacgcaaaatgaccttagtaaatacttggaggcag
species | Oryza sativa |
transcript | LOC_Os01g13570.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGATTCTTTAAAAGAGGCTCATCTATTCTTCTTAGAGGGCATGACCAATG CGGATGCTAAGAAGGAATATCCAGAGTTGTACACCAGATGGCGGGAGGATCEST: gi|88214195|gb|CI214044.1|CI214044
genomic: TGATTCTTTAAAAGAGGCTCATCTATTCTTCTTAGAGGGCATGACCAATGgtatgttgtt ... ttggaggcagCGGATGCTAAGAAGGAATATCCAGAGTTGTACACCAGATGGCGGGAGGATC
EST: CTTCTTAGAGGGCATGACCAATG CGGATGCTAAGAAGGAATATCCAGAGTTGTACACCAGATGGCGGGAGGATCEST: gi|29688715|gb|CB684990.1|CB684990
genomic: CTTCTTAGAGGGCATGACCAATGgtatgttgtt ... ttggaggcagCGGATGCTAAGAAGGAATATCCAGAGTTGTACACCAGATGGCGGGAGGATC
EST: TGATTCTTTAAAAGAGGCTCATCTATTCTTCTTAGAGGGCATGACCAATG CGGATGCTAAGAAGGAATATCCAGAGTTGTACCCCAGATGGCGGGAGGATCEST: gi|29663287|gb|CB659562.1|CB659562
genomic: TGATTCTTTAAAAGAGGCTCATCTATTCTTCTTAGAGGGCATGACCAATGgtatgttgtt ... ttggaggcagCGGATGCTAAGAAGGAATATCCAGAGTTGTACACCAGATGGCGGGAGGATC
EST: TGATTCTTTAAAAGAGGCTCATCTATTCTTCTTAGAGGGCATGACCAATG CGGATGCTAAGAAGGAATATCCAGAGTTGTACACCAGATGGCGGGAGGATCEST: gi|29663288|gb|CB659563.1|CB659563
genomic: TGATTCTTTAAAAGAGGCTCATCTATTCTTCTTAGAGGGCATGACCAATGgtatgttgtt ... ttggaggcagCGGATGCTAAGAAGGAATATCCAGAGTTGTACACCAGATGGCGGGAGGATC
EST: TGATTCTTTAAAAGAGGCTCATCTATTCTTCTTAGAGGGCATGACCAATG CGGATGCTAAGAAGGAATATCCAGAGTTGTACACCAGATGGCGGGAGGATC
genomic: TGATTCTTTAAAAGAGGCTCATCTATTCTTCTTAGAGGGCATGACCAATGgtatgttgtt ... ttggaggcagCGGATGCTAAGAAGGAATATCCAGAGTTGTACACCAGATGGCGGGAGGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAACTGCCGAAATTATATGGAAGGGAAAGGAGGAGCCTCTTATATTTCTTGATTCTTTAAAAGAGGCTCATCTATTCTTCTTAGAGGGCATGACCAATGgtatgttgttgcttgtacaagccttcaatctcttcactcttactgtccatttacgcaaaatgaccttagtaaatacttggaggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG