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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAACAACATCGCTTACGAATGAGATGTTAACTTTGTCGAAGAAGATTACTCTTGTCAGGCATGGTTTGAGCACTTGGAATGCGGAAAGCCGCGTACAGgttggtatttacctttcaatcagaggttcactgcaacttctgctcccatttctttcccatgattaatattttggtgaggtgtacactgtttgtagatgtg...

Basic information

species Oryza sativa
transcript LOC_Os01g13570.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g13570.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G114550_T01 (Zea mays), 5'ss of exon 1
AGCAACAACATCGCTTACGAATGAGATGTTAACTTTGTCGAAGAAGATTACTCTTGTCAGGCATGGTTTGAGCACTTGGAATGCGGAAAGCCGCGTACAGgttggtatttacctttcaatcagaggttcactgcaacttctgctcccatttctttcccatgattaatattttggtgaggtgtacactgtttgtagatgtg--------
||||||  |||| || || |||  |||  |||| |  || ||||||||||||||||||||||||||  | ||| | |||||||| ||||||   || |||||| ||   |    | |  | |      ||   ||| ||    |  ||||       ||||| |      |  ||||  || |   ||  ||||| |           
AGCAACGGCATCACTCACCAATAGGATCCTAACATCTTCCAAGAAGATTACTCTTGTCAGGCATGGCCTAAGCTCATGGAATGCAGAAAGCAATGTCCAGgtttgttggtggtgtaccgttaattaccca--acaattttcatttacattgg----acatgaatgtggact--gtgaaatgcaatttgcatgtagttagctacacgct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29688715|gb|CB684990.1|CB684990
EST:     CTCTTGTCAGGCATGGTTTGAGCACTTGGAATGCGGAAAGCCGCGTACAG                         GGAAGCTCAAATCTGTCCGTGTTAACAGAAACTGGTGCCAAGCAGGCAGAG
genomic: CTCTTGTCAGGCATGGTTTGAGCACTTGGAATGCGGAAAGCCGCGTACAGgttggtattt ... ttttgtctagGGAAGCTCAAATCTGTCCGTGTTAACAGAAACTGGTGCCAAGCAGGCAGAG
EST: gi|86899518|gb|CI295451.1|CI295451
EST:     CTCTTGTCAGGCATGGTTTGAGCACTTGGAATGCGGAAAGCCGCGTACAG                         GCAAGCTCAAATCTGTCCGTGTTAACAGAAACTGGTGCCAAGCAGGCAGAG
genomic: CTCTTGTCAGGCATGGTTTGAGCACTTGGAATGCGGAAAGCCGCGTACAGgttggtattt ... ttttgtctagGGAAGCTCAAATCTGTCCGTGTTAACAGAAACTGGTGCCAAGCAGGCAGAG
EST: gi|29663287|gb|CB659562.1|CB659562
EST:     CTCTTGTCAGGCATGGTTTGAGCACTTGGAATGCGGAAAGCCGCGTACAG                         GGAAGCTCAAATCTGTCCGTGTTAACAGAAACTGGTGCCAAGCAGGCAGAG
genomic: CTCTTGTCAGGCATGGTTTGAGCACTTGGAATGCGGAAAGCCGCGTACAGgttggtattt ... ttttgtctagGGAAGCTCAAATCTGTCCGTGTTAACAGAAACTGGTGCCAAGCAGGCAGAG
EST: gi|29663288|gb|CB659563.1|CB659563
EST:     CTCTTGTCAGGCATGGTTTGAGCACTTGGAATGCGGAAAGCCGCGTACAG                         GGAAGCTCAAATCTGTCCGTGTTAACAGAAACTGGTGCCAAGCAGGCAGAG
genomic: CTCTTGTCAGGCATGGTTTGAGCACTTGGAATGCGGAAAGCCGCGTACAGgttggtattt ... ttttgtctagGGAAGCTCAAATCTGTCCGTGTTAACAGAAACTGGTGCCAAGCAGGCAGAG
EST: gi|88571367|gb|CI662740.1|CI662740
EST:     CTCTTGTCAGGCATGGTTTGAGCACTTGGAATGCGGAAAGCCGCGTACAG                         GGAAGCTCAAATCTGTCCGTGTTAACAGAAACTGGTG
genomic: CTCTTGTCAGGCATGGTTTGAGCACTTGGAATGCGGAAAGCCGCGTACAGgttggtattt ... ttttgtctagGGAAGCTCAAATCTGTCCGTGTTAACAGAAACTGGTG