1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctaaaaattatataatttttatgcaaacaataaaagatattttaaatttccattaatatttttacaatgaaactaatgcaatcctctttttttttttcagATTTCCCCGGAGCCAAGCCGGTGAGCGACGCGGTGGCCAAGTCCGGCACGACGCCGCTCTCCCCGGCGATCGCCTTCATCCTGGAGAAGGTCGCGCCTTT
species | Oryza sativa |
transcript | LOC_Os01g13210.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAAGAACGGTCCTGCAGTCACTAAGTTCCTTGAGGAATTGGCTAAGATTG ATTTCCCCGGAGCCAAGCCGGTGAGCGACGCGGTGGCCAAGTCCGGCACGAEST: gi|86891106|gb|CI305916.1|CI305916
genomic: GAAGAACGGTCCTGCAGTCACTAAGTTCCTTGAGGAATTGGCTAAGATTGgtaagaattg ... tttttttcagATTTCCCCGGAGCCAAGCCGGTGAGCGACGCGGTGGCCAAGTCCGGCACGA
EST: GAAGAACGGTCCTGCAGTCACTAAGTTCCTTGAGGAATTGGCTAAGATTG ATTTCCCCGGAGCCAAGCCGGTGAGCGACGCGGTGGCCAAGTCCGGCACGAEST: gi|58679358|gb|CK068045.1|CK068045
genomic: GAAGAACGGTCCTGCAGTCACTAAGTTCCTTGAGGAATTGGCTAAGATTGgtaagaattg ... tttttttcagATTTCCCCGGAGCCAAGCCGGTGAGCGACGCGGTGGCCAAGTCCGGCACGA
EST: GAAGAACGGTCCTGCAGTCACTAAGTTCCTTGAGGAATTGGCTAAGATTG ATTTCCCCGGAGCCAAGCCGGTGAGCGACGCGGTGGCCAAGTCCGGCACGA
genomic: GAAGAACGGTCCTGCAGTCACTAAGTTCCTTGAGGAATTGGCTAAGATTGgtaagaattg ... tttttttcagATTTCCCCGGAGCCAAGCCGGTGAGCGACGCGGTGGCCAAGTCCGGCACGA
atttccattaatatttttacaatgaaactaatgcaatcctctttttttttttcagATTTCCCCGGAGCCAAGCCGGTGAGCGACGCGGTGGCCAAGTCCGGCACGACGCCGCTCTCCCCGGCGATCGCCTTCATCCTGGAGAAGGTCGCGCCTTT
aactaat putative branch site (score: 147)
tgcaatcctctttttt CT-rich tract
attaatatttttacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaaaaattatataatttttatgcaaacaataaaagatattttaaatttccattaatatttttacaatgaaactaatgcaatcctctttttttttttcagATTTCCCCGGAGCCAAGCCGGTGAGCGACGCGGTGGCCAAGTCCGGCACGACGCCGCTCTCCCCGGCGATCGCCTTCATCCTGGAGAAGGTCGCGCCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA