1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaataatttttcaggtgtttcataggttgcttgaggacatccttgctcaagaaataataatttgcatgcttatctgtaaaaatattgcagGCTTTGTTGAAGGACAAAAAAACAGCCAGCAAAATCAAGAAGAACGGTCCTGCAGTCACTAAGTTCCTTGAGGAATTGGCTAAGATTG
species | Oryza sativa |
transcript | LOC_Os01g13210.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAGAGCCCAAGGTTGTGGAGGTTGTTGAGTCATCTCCTCCTGAGATTAAG GCTTTGTTGAAGGACNNNNNNNCAGCCAGCAAAATCAAGAAGAACGGTCCTEST: gi|86891106|gb|CI305916.1|CI305916
genomic: TAGAGCCCAAGGTTGTGGAGGTTGTTGAGTCATCTCCTCCTGAGATTAAGgtaataattt ... aatattgcagGCTTTGTTGAAGGACAAAAAAACAGCCAGCAAAATCAAGAAGAACGGTCCT
EST: TAGAGCCCAAGGTTGTGGAGGTTGTTGAGTCATCTCCTCCTGAGATTAAG GCTTTGTTGAAGGACNNNNNNNCAGCCAGCAAAATCAAGAAGAACGGTCCTEST: gi|58679358|gb|CK068045.1|CK068045
genomic: TAGAGCCCAAGGTTGTGGAGGTTGTTGAGTCATCTCCTCCTGAGATTAAGgtaataattt ... aatattgcagGCTTTGTTGAAGGACAAAAAAACAGCCAGCAAAATCAAGAAGAACGGTCCT
EST: TAGAGCCCAAGGTTGTGGAGGTTGTTGAGTCATCTCCTCCTGAGATTAAG GCTTTGTTGAAGGACNNNNNNNCAGCCAGCAAAATCAAGAAGAACGGTCCT
genomic: TAGAGCCCAAGGTTGTGGAGGTTGTTGAGTCATCTCCTCCTGAGATTAAGgtaataattt ... aatattgcagGCTTTGTTGAAGGACAAAAAAACAGCCAGCAAAATCAAGAAGAACGGTCCT
gacatccttgctcaagaaataataatttgcatgcttatctgtaaaaatattgcagGCTTTGTTGAAGGACAAAAAAACAGCCAGCAAAATCAAGAAGAACGGTCCTGCAGTCACTAAGTTCCTTGAGGAATTGGCTAAGATTG
tcaagaaataataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataatttttcaggtgtttcataggttgcttgaggacatccttgctcaagaaataataatttgcatgcttatctgtaaaaatattgcagGCTTTGTTGAAGGACAAAAAAACAGCCAGCAAAATCAAGAAGAACGGTCCTGCAGTCACTAAGTTCCTTGAGGAATTGGCTAAGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG