1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagcttcttcttctctagcttactttgatcatttccatggtttcatgcatgcatgtttagtttcatgatatatatgaaatatcctatggatttttgttctgtactttttttaagaaggggtttttgttatggattttttattgctgttggacagTTGGAGTACTAGAGATTAATTTCTTGAAGGAGAGAAATGACAAGTGTCTGGAAGACCAAGGTTCTCACTGGACTCAACAAGCTCTTTGACAAGGATGGAA
species | Oryza sativa |
transcript | LOC_Os01g13210.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGCAATAGGCATCTCTTTCTTCTTTCTCGTTTGCTCCTCCTTGCTTCAT TTGGAGTACTAGAGATTAATTTCTTGAAGGAGAGAAATGACAAGTGTCTGGEST: gi|86891106|gb|CI305916.1|CI305916
genomic: AAGCAATAGGCATCTCTCTCTTCTTTCTC-TTT-CTCCTCCTTGCTTCATgtaagcttct ... tgttggacagTTGGAGTACTAGAGATTAATTTCTTGAAGGAGAGAAATGACAAGTGTCTGG
EST: CTCCTTGCTTCAT TTGGAGTACTAGAGATTAATTTCTTGAAGGAGAGAAATGACAAGTGTCTGGEST: gi|58679358|gb|CK068045.1|CK068045
genomic: CTCCTTGCTTCATgtaagcttct ... tgttggacagTTGGAGTACTAGAGATTAATTTCTTGAAGGAGAGAAATGACAAGTGTCTGG
EST: ACAAGCAATAGGCATCTCTTTCTTCTTTCTCTTTCTCCTCCTTGCTTCAT TTGGAGTACTAGAGATTAATTTCTTGAAGGAGAGAAATGACAAGTGTCTGG
genomic: ACAAGCAATAGGCATCTCTCTCTTCTTTCTCTTTCTCCTCCTTGCTTCATgtaagcttct ... tgttggacagTTGGAGTACTAGAGATTAATTTCTTGAAGGAGAGAAATGACAAGTGTCTGG
tgtactttttttaagaaggggtttttgttatggattttttattgctgttggacagTTGGAGTACTAGAGATTAATTTCTTGAAGGAGAGAAATGACAAGTGTCTGGAAGACCAAGGTTCTCACTGGACTCAACAAGCTCTTTGACAAGGATGGAA
tttttgttatggattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcttcttcttctctagcttactttgatcatttccatggtttcatgcatgcatgtttagtttcatgatatatatgaaatatcctatggatttttgttctgtactttttttaagaaggggtttttgttatggattttttattgctgttggacagTTGGAGTACTAGAGATTAATTTCTTGAAGGAGAGAAATGACAAGTGTCTGGAAGACCAAGGTTCTCACTGGACTCAACAAGCTCTTTGACAAGGATGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA