1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATGTGTTCATCCTGTCCTTCTCCCTGATAAGCAGGGCGAGCTATGAGAATGTTCAGAAGAAGgtgaactgcttagaaaccccttgtcattctgatgcaattttttacttggttggatatgttactttccttcgcattgcgctagtagaatcgctatggtttc...
species | Oryza sativa |
transcript | LOC_Os01g12900.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGTCCTTCTCCCTGATAAGCAGGGCGA-CTATGAGAATGTTCAGAAGAAG TGGATGCCAGA-CTTTCGCCGGTTTTCGCCTGGTGTNC-TGTA-TTCTTNTEST: gi|55439594|gb|CV733107.1|CV733107
genomic: TGTCCTTCTCCCTGATAAGCAGGGCGAGCTATGAGAATGTTCAGAAGAAGgtgaactgct ... atctggacagTGGATGCCAGAGCTT-CGCCGGTTTGCGCCTGGTGTTCCTGTAGTTCTTGT
EST: TGTCCTTCTCCCTGATAAGCAGGGCGAGCTATGAGAATGTTCAGAAGAAG TGGATGCCAGAGCTTCGCCGGTTTGCGCCTGGTGTTCCTGTAGTTCTTGTTEST: gi|38482617|gb|CF966571.1|CF966571
genomic: TGTCCTTCTCCCTGATAAGCAGGGCGAGCTATGAGAATGTTCAGAAGAAGgtgaactgct ... atctggacagTGGATGCCAGAGCTTCGCCGGTTTGCGCCTGGTGTTCCTGTAGTTCTTGTT
EST: TGTCCTTCTCCCTGATAAGCAGGGCGAGCTATGAGAATGTTCAGAAGAAG TGGATGCCAGAGCTTCGCCGGTTTGCGCCTGGTGTTCCTGTAGTTCTTGTT
genomic: TGTCCTTCTCCCTGATAAGCAGGGCGAGCTATGAGAATGTTCAGAAGAAGgtgaactgct ... atctggacagTGGATGCCAGAGCTTCGCCGGTTTGCGCCTGGTGTTCCTGTAGTTCTTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTACAGCAGGTTGAGGCCTCTGAGCTACAGGGGAGCCGATGTGTTCATCCTGTCCTTCTCCCTGATAAGCAGGGCGAGCTATGAGAATGTTCAGAAGAAGgtgaactgcttagaaaccccttgtcattctgatgcaattttttacttggttggatatgttactttccttcgcattgcgctagtagaatcgctatggtttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG