1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gttgagtgccgcgccgccgctaatcccttcctctccgttcttgctccggcccgccgtgctggcctatcttctcttcggctcgatttggtttggtttggtttgatttgattcggtttggtttgggcagGATTACATCCCCACCGTGTTCGACAACTTCAGCGCCAATGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAG
species | Oryza sativa |
transcript | LOC_Os01g12900.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGGGAAGACGTGCATGCTCATCTGCTACACCTGCAACAAGTTCCCCACC GATTACATCCCCACCGTGTTCGACAACTTCAGCGCCAATGTCTCCGTGGACEST: gi|7134839|gb|AU082699.1|AU082699
genomic: TGGGGAAGACGTGCATGCTCATCTGCTACACCTGCAACAAGTTCCCCACCgttgagtgcc ... gtttgggcagGATTACATCCCCACCGTGTTCGACAACTTCAGCGCCAATGTCTCCGTGGAC
EST: TGGGGAAGACGTGCATGCTCATCTGCTACACCTGCAACAAGTTCCCCACC GATTACATCCCCACCGTGTTCGACAACTTCAGCGCCAATGTCTCCGTGGACEST: gi|88396989|gb|CI578138.1|CI578138
genomic: TGGGGAAGACGTGCATGCTCATCTGCTACACCTGCAACAAGTTCCCCACCgttgagtgcc ... gtttgggcagGATTACATCCCCACCGTGTTCGACAACTTCAGCGCCAATGTCTCCGTGGAC
EST: TGGGGAAGACGTGCATGCTCATCTGCTACACCTGCAACAAGTTCCCCACC GATTACATCCCCACCGTGTTCGACAACTTCAGCGCCAATGTCTCCGTGGACEST: gi|55439594|gb|CV733107.1|CV733107
genomic: TGGGGAAGACGTGCATGCTCATCTGCTACACCTGCAACAAGTTCCCCACCgttgagtgcc ... gtttgggcagGATTACATCCCCACCGTGTTCGACAACTTCAGCGCCAATGTCTCCGTGGAC
EST: TGGGGAAGACGTGCATGCTCATCTGCTACACCTGCAACAAGTTCCCCACC GATTACATCCCCACCGTGTTCGACAACTTCAGCGCCAATGTCTCCGTGGACEST: gi|88740975|gb|CI764483.1|CI764483
genomic: TGGGGAAGACGTGCATGCTCATCTGCTACACCTGCAACAAGTTCCCCACCgttgagtgcc ... gtttgggcagGATTACATCCCCACCGTGTTCGACAACTTCAGCGCCAATGTCTCCGTGGAC
EST: TGGGGAAGACGTGCATGCTCATCTGCTACACCTGCAACAAGTTCCCCACC GATTACATCCCCACCGTGTTCGACAACTTCAGCGCCAATGTCTCCGTGGACEST: gi|88313328|gb|CI594958.1|CI594958
genomic: TGGGGAAGACGTGCATGCTCATCTGCTACACCTGCAACAAGTTCCCCACCgttgagtgcc ... gtttgggcagGATTACATCCCCACCGTGTTCGACAACTTCAGCGCCAATGTCTCCGTGGAC
EST: TGGGGAAGACGTGCATGCTCATCTGCTACACCTGCAACAAGTTCCCCACC GATTACATCCCCACCGTGTTCGACAACTTCAGCGCCAATGTCTCCGTGGACEST: gi|38482617|gb|CF966571.1|CF966571
genomic: TGGGGAAGACGTGCATGCTCATCTGCTACACCTGCAACAAGTTCCCCACCgttgagtgcc ... gtttgggcagGATTACATCCCCACCGTGTTCGACAACTTCAGCGCCAATGTCTCCGTGGAC
EST: TGGGGAAGACGTGCATGCTCATCTGCTACACCTGCAACAAGTTCCCCACC GATTACGTCCCCACCGTGTTCGACAACTTCAGCGCCAATGTCTCCGTGGACEST: gi|427824|gb|D23963.1|D23963
genomic: TGGGGAAGACGTGCATGCTCATCTGCTACACCTGCAACAAGTTCCCCACCgttgagtgcc ... gtttgggcagGATTACATCCCCACCGTGTTCGACAACTTCAGCGCCAATGTCTCCGTGGAC
EST: TGGGGAAGACGTGCATCCTCATCTGCTACACCTGCAACAAGTTCCCCACC GATTACATCCCCACCGTGTTCGACAACTTCAGCGCCAATGTCTCCGTGGAC
genomic: TGGGGAAGACGTGCATGCTCATCTGCTACACCTGCAACAAGTTCCCCACCgttgagtgcc ... gtttgggcagGATTACATCCCCACCGTGTTCGACAACTTCAGCGCCAATGTCTCCGTGGAC
cttcggctcgatttggtttggtttggtttgatttgattcggtttggtttgggcagGATTACATCCCCACCGTGTTCGACAACTTCAGCGCCAATGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAG
atttgat putative branch site (score: 5)
tttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgagtgccgcgccgccgctaatcccttcctctccgttcttgctccggcccgccgtgctggcctatcttctcttcggctcgatttggtttggtttggtttgatttgattcggtttggtttgggcagGATTACATCCCCACCGTGTTCGACAACTTCAGCGCCAATGTCTCCGTGGACGGGAGCGTCGTCAACCTCGGCCTCTGGGACACTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG