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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agaaagcccatttacatgtacaccacattgcatcatgctttgtctcattacctttagaatctctaaagtgtgtactaatgacctgacttcatctggacagTGGATGCCAGAGCTTCGCCGGTTTGCGCCTGGTGTTCCTGTAGTTCTTGTTGGAACCAAGTTGG

Basic information

species Oryza sativa
transcript LOC_Os01g12900.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7134828|gb|AU082694.1|AU082694
EST:     TGTCCTTCTCCCTGATAAGCAGGGCGA-CTATGAGAATGTTCAGAAGAAG                         TGGATGCCAGA-CTTTCGCCGGTTTTCGCCTGGTGTNC-TGTA-TTCTTNT
genomic: TGTCCTTCTCCCTGATAAGCAGGGCGAGCTATGAGAATGTTCAGAAGAAGgtgaactgct ... atctggacagTGGATGCCAGAGCTT-CGCCGGTTTGCGCCTGGTGTTCCTGTAGTTCTTGT
EST: gi|55439594|gb|CV733107.1|CV733107
EST:     TGTCCTTCTCCCTGATAAGCAGGGCGAGCTATGAGAATGTTCAGAAGAAG                         TGGATGCCAGAGCTTCGCCGGTTTGCGCCTGGTGTTCCTGTAGTTCTTGTT
genomic: TGTCCTTCTCCCTGATAAGCAGGGCGAGCTATGAGAATGTTCAGAAGAAGgtgaactgct ... atctggacagTGGATGCCAGAGCTTCGCCGGTTTGCGCCTGGTGTTCCTGTAGTTCTTGTT
EST: gi|38482617|gb|CF966571.1|CF966571
EST:     TGTCCTTCTCCCTGATAAGCAGGGCGAGCTATGAGAATGTTCAGAAGAAG                         TGGATGCCAGAGCTTCGCCGGTTTGCGCCTGGTGTTCCTGTAGTTCTTGTT
genomic: TGTCCTTCTCCCTGATAAGCAGGGCGAGCTATGAGAATGTTCAGAAGAAGgtgaactgct ... atctggacagTGGATGCCAGAGCTTCGCCGGTTTGCGCCTGGTGTTCCTGTAGTTCTTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattacctttagaatctctaaagtgtgtactaatgacctgacttcatctggacagTGGATGCCAGAGCTTCGCCGGTTTGCGCCTGGTGTTCCTGTAGTTCTTGTTGGAACCAAGTTGG
                                         cttcatct  CT-rich tract
 tttagaat  TA-rich tract