1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agagcttggaacaggatactaacaataacttgaaaaatacctctgtttagttttgttgctaaacactcttcatttactagtttatgtatcctcatttcagAAGGACCCAGCTAGGGTATTACACATGAACACAAGGCGCATATTGCATGAAGTATGGAG
species | Oryza sativa |
transcript | LOC_Os01g12470.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GATG-TGCCAAGACACGCAGACAAATAGAG AAGGACCCAGCTAGGGTATTACACATGAACACAAGGCGCATATTGCATGAAEST: gi|66920313|gb|CX107161.1|CX107161
genomic: GATGTTGCCAAGACACGCAGACAAATAGAGgcaagcttga ... ctcatttcagAAGGACCCAGCTAGGGTATTACACATGAACACAAGGCGCATATTGCATGAA
EST: CTGGTGCTACCTGTCCTCTCGATGTTGCCAAGACACGCAGACAAATAGAG AAGGACCCAGCTAGGGTATTACACATGAACACAAGGCGCATATTGCATGAAEST: gi|86534758|gb|CI174964.1|CI174964
genomic: CTGGTGCTACCTGTCCTCTCGATGTTGCCAAGACACGCAGACAAATAGAGgcaagcttga ... ctcatttcagAAGGACCCAGCTAGGGTATTACACATGAACACAAGGCGCATATTGCATGAA
EST: CTGGTGCTACTTGTCCTCTCGATGTTGCCAAGACACGCAGACAAATAGAG AAGGACCCAGCTAGGGTATTACACATGAACACAAGGCGCATATTGCATGAAEST: gi|218490164|gb|FG951467.1|FG951467
genomic: CTGGTGCTACCTGTCCTCTCGATGTTGCCAAGACACGCAGACAAATAGAGgcaagcttga ... ctcatttcagAAGGACCCAGCTAGGGTATTACACATGAACACAAGGCGCATATTGCATGAA
EST: CTGGTGCTACCTGTCCTCTCGATGTTGCCAAGACACGCAGACAAATAGAG AAGGACCCAGCTAGGGTATTACACATGAACACAAGGCGCATATTGCATGAAEST: gi|29646721|gb|CB651728.1|CB651728
genomic: CTGGTGCTACCTGTCCTCTCGATGTTGCCAAGACACGCAGACAAATAGAGgcaagcttga ... ctcatttcagAAGGACCCAGCTAGGGTATTACACATGAACACAAGGCGCATATTGCATGAA
EST: CTGGTGCTACCTGTCCTCTCGATGTTGCCAAGACACGCAGACAAATAGAG AAGGACCCAGCTAGGGTATTACACATGAACACAAGGCGCATATTGCATGAAEST: gi|88722567|gb|CI746077.1|CI746077
genomic: CTGGTGCTACCTGTCCTCTCGATGTTGCCAAGACACGCAGACAAATAGAGgcaagcttga ... ctcatttcagAAGGACCCAGCTAGGGTATTACACATGAACACAAGGCGCATATTGCATGAA
EST: AGACAAATAGAG AAGGACCCAGCTAGGGTATTACACATGAACACAAGGCGCATATTGCATGAAEST: gi|88840814|gb|CI080268.1|CI080268
genomic: AGACAAATAGAGgcaagcttga ... ctcatttcagAAGGACCCAGCTAGGGTATTACACATGAACACAAGGCGCATATTGCATGAA
EST: AAGACACGCAGACAAATAGAG AAGGACCCAGCTAGGGTATTACACATGAACACAAGGCGCATATTGCATGAA
genomic: AAGACACGCAGACAAATAGAGgcaagcttga ... ctcatttcagAAGGACCCAGCTAGGGTATTACACATGAACACAAGGCGCATATTGCATGAA
tttagttttgttgctaaacactcttcatttactagtttatgtatcctcatttcagAAGGACCCAGCTAGGGTATTACACATGAACACAAGGCGCATATTGCATGAAGTATGGAG
tgctaaa putative branch site (score: 13)
tcctcatttc putative PPT
atttactagtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agagcttggaacaggatactaacaataacttgaaaaatacctctgtttagttttgttgctaaacactcttcatttactagtttatgtatcctcatttcagAAGGACCCAGCTAGGGTATTACACATGAACACAAGGCGCATATTGCATGAAGTATGGAG
- -gcttgga
- - - - - - - - - - aacaata
- - - - - - - - - - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - - - -tctgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgtat