1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cactgttttatacctgaacagctaaacattttttatgataacgaaatttattctgtatggcacttatttttatgccattactctctttttatataattagGCCTTTAAAGTATCAAATGTTGGAGGAAAACCCCCTGGAATGTGGAAGACTTTGCTTGGTGTGCTTGCATTGAGACAGAGCATCAATCATCCTGAAAATA
species | Oryza sativa |
transcript | LOC_Os01g12470.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGGCATGCATAACTTGTTCCCCTATTGAGTTGGCAAGAACACGGATGCAG GCCTTTAAAGTATCAAATGTTGGAGGAAAACCCCCTGGAATGTGGAAGACTEST: gi|7273940|gb|AU083484.1|AU083484
genomic: TGGCATGCATAACTTGTTCCCCTATTGAGTTGGCAAGAACACGGATGCAGgtcagtttgt ... atataattagGCCTTTAAAGTATCAAATGTTGGAGGAAAACCCCCTGGAATGTGGAAGACT
EST: TGGCATGCATAACTTGTTCCCCTATTGAGTTGGCAAGAACACGGATGCAG GCCTTTAAAGTATCAAATGTTGGAGGAAAACCCCCTGGAATGTGGAAGACT
genomic: TGGCATGCATAACTTGTTCCCCTATTGAGTTGGCAAGAACACGGATGCAGgtcagtttgt ... atataattagGCCTTTAAAGTATCAAATGTTGGAGGAAAACCCCCTGGAATGTGGAAGACT
atttattctgtatggcacttatttttatgccattactctctttttatataattagGCCTTTAAAGTATCAAATGTTGGAGGAAAACCCCCTGGAATGTGGAAGACTTTGCTTGGTGTGCTTGCATTGAGACAGAGCATCAATCATCCTGAAAATA
ttactctctttttat CT-rich tract
attactctctttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cactgttttatacctgaacagctaaacattttttatgataacgaaatttattctgtatggcacttatttttatgccattactctctttttatataattagGCCTTTAAAGTATCAAATGTTGGAGGAAAACCCCCTGGAATGTGGAAGACTTTGCTTGGTGTGCTTGCATTGAGACAGAGCATCAATCATCCTGAAAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - cctgaac
- - - - - - - - - -agctaaa
- - - - - - - - - - - - - - - - ttatgat
- - - - - - - - - - - - - - - - - - - -aacgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - ctgtatg