1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCCTTTAAAGTATCAAATGTTGGAGGAAAACCCCCTGGAATGTGGAAGACTTTGCTTGGTGTGCTTGCATTGAGACAGAGCATCAATCATCCTGAAAATAgtatgtactttcctatgtactgtttgttagccttgaccgaaacacaaacatgcattctcatctcattcaagggcatcagcaaaattgctaaacaacgtca...
species | Oryza sativa |
transcript | LOC_Os01g12470.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTTGCTTGGTGTGCTTGCATTGAGACAGAGCATCAATCATCCTGAAAATA TTCGGTCATACCACCTTCTATGGACTGGTCTTGGAGEST: gi|29646721|gb|CB651728.1|CB651728
genomic: TTTGCTTGGTGTGCTTGCATTGAGACAGAGCATCAATCATCCTGAAAATAgtatgtactt ... ttgcgaacagTTCGGTCATACCACCTTCTATGGACTGGTCTTGGAG
EST: TTTGCTTGGTGTGCTTGCATTGAGACAGAGCATCAATCATCCTGAAAATA TTCGGTCATACCACCTTCTATGGACTGGTCTTGGAGCACAACTTGCACGTGEST: gi|7273940|gb|AU083484.1|AU083484
genomic: TTTGCTTGGTGTGCTTGCATTGAGACAGAGCATCAATCATCCTGAAAATAgtatgtactt ... ttgcgaacagTTCGGTCATACCACCTTCTATGGACTGGTCTTGGAGCACAACTTGCACGTG
EST: TTTGCTTGGTGTGCTTGCATTGAGACAGAGCATCAATCATCCTGAAAATA TTCGGTCATACCACCTTCTATG
genomic: TTTGCTTGGTGTGCTTGCATTGAGACAGAGCATCAATCATCCTGAAAATAgtatgtactt ... ttgcgaacagTTCGGTCATACCACCTTCTATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTTTAAAGTATCAAATGTTGGAGGAAAACCCCCTGGAATGTGGAAGACTTTGCTTGGTGTGCTTGCATTGAGACAGAGCATCAATCATCCTGAAAATAgtatgtactttcctatgtactgtttgttagccttgaccgaaacacaaacatgcattctcatctcattcaagggcatcagcaaaattgctaaacaacgtca
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