1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gagcaatgatgttgtcctcttggttattttttatttgccatagtattgtgtgcctcagtcttctagtttaagaaagtaacaagtagttctcttatttcagATATGACAAATATTACCAAACCCCACGTGTCTGGCTTACCGGATATGATGAG
species | Oryza sativa |
transcript | LOC_Os01g10290.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCTGAAGATGACAACATCCTTCGTACTAGGACATATGACGTTAGCATCAC ATATGACAAATATTGCCAAACCCCCCGTGTCTGGCTTACCGGATATGATGAEST: gi|55440203|gb|CV733411.1|CV733411
genomic: CCTGAAGATGACAACATCCTTCGTACTAGGACATATGACGTTAGCATCACgtaagctctt ... cttatttcagATATGACAAATATTACCAAACCCCACGTGTCTGGCTTACCGGATATGATGA
EST: CCTGAAGATGACAACATCCTTCGTACTAGGACATATGACGTTAGCATCAC ATATGACAAATATTACCAAACCCCACGTGTCTGGCTTACCGGATATGATGAEST: gi|86497450|gb|CI140083.1|CI140083
genomic: CCTGAAGATGACAACATCCTTCGTACTAGGACATATGACGTTAGCATCACgtaagctctt ... cttatttcagATATGACAAATATTACCAAACCCCACGTGTCTGGCTTACCGGATATGATGA
EST: CCTGAAGATGACAACATCCTTCGTACTAGGACATATGACGTTAGCATCAC ATATGACAAATATTACCAAACCCCACGTGTCTGGCTTACCGGATATGATGAEST: gi|29686213|gb|CB682488.1|CB682488
genomic: CCTGAAGATGACAACATCCTTCGTACTAGGACATATGACGTTAGCATCACgtaagctctt ... cttatttcagATATGACAAATATTACCAAACCCCACGTGTCTGGCTTACCGGATATGATGA
EST: CCTGAAGATGACAACATCCTTCGTACTAGGACATATGACGTTAGCATCAC ATATGACAAATATTACCAAACCCCACGTGTCTGGCTTACCGGATATGATGAEST: gi|87015628|gb|CI277586.1|CI277586
genomic: CCTGAAGATGACAACATCCTTCGTACTAGGACATATGACGTTAGCATCACgtaagctctt ... cttatttcagATATGACAAATATTACCAAACCCCACGTGTCTGGCTTACCGGATATGATGA
EST: CCTGAAGATGACAACATCCTTCGTACTAGGACATATGACGTTAGCATCAC ATATGACAAATATTACCAAACCCCACGTGTCTGGCTTACCGGATATGATGA
genomic: CCTGAAGATGACAACATCCTTCGTACTAGGACATATGACGTTAGCATCACgtaagctctt ... cttatttcagATATGACAAATATTACCAAACCCCACGTGTCTGGCTTACCGGATATGATGA
ttgtgtgcctcagtcttctagtttaagaaagtaacaagtagttctcttatttcagATATGACAAATATTACCAAACCCCACGTGTCTGGCTTACCGGATATGATGAG
aagtaac putative branch site (score: 2)
ttctcttatttc putative PPT
tttaagaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagcaatgatgttgtcctcttggttattttttatttgccatagtattgtgtgcctcagtcttctagtttaagaaagtaacaagtagttctcttatttcagATATGACAAATATTACCAAACCCCACGTGTCTGGCTTACCGGATATGATGAG
- - -atgatgt
- - - - - - - - - - - - - - - - - -tgccata
- - - - - - - - - - - - - - - - - - - - - - - - -gtgcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaacaa