1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AAAGTCTATTCCCTCATATTTCAGTGCTGGTAAGAAGGCTGAAGAAGAGGAGGATATACCAGACATGGACACTTATGAAGACTCAGGGAATGATTCAGTGgtaagaaaggctgtgatcctttcttcgatgtggttaaggaaggctcataatgttcatagtcattactgattccagctttgccttcgtcatcttattttag
species | Oryza sativa |
transcript | LOC_Os01g10290.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGGATATACCAGACATGGACTCTTATGAAGACTCAGGGAATGATTCAGTG GCTACCGCTCAACCTTCATATTTTGTTGCAGAAGAGCCTGAAGATGACAACEST: gi|55440203|gb|CV733411.1|CV733411
genomic: AGGATATACCAGACATGGACACTTATGAAGACTCAGGGAATGATTCAGTGgtaagaaagg ... cttattttagGCTACCGCTCAACCTTCATATTTTGTCGCAGAAGAGCCTGAAGATGACAAC
EST: AGGATATACCAGACATGGACACTTATGAAGACTCAGGGAATGATTCAGTG GCTACCGTTCATTCTTCATATTTTGTCGCAGAAGAGCCTGAAGATGACAACEST: gi|29638206|gb|CB643215.1|CB643215
genomic: AGGATATACCAGACATGGACACTTATGAAGACTCAGGGAATGATTCAGTGgtaagaaagg ... cttattttagGCTACCGCTCAACCTTCATATTTTGTCGCAGAAGAGCCTGAAGATGACAAC
EST: AGGATATACCAGACATGGACACTTATGAAGACTCAGGGAATGATTCAGTG GCTACCGCTCAACCTTCATATTTTGTCGCAGAAGAGCCTGAAGATGACAACEST: gi|86497450|gb|CI140083.1|CI140083
genomic: AGGATATACCAGACATGGACACTTATGAAGACTCAGGGAATGATTCAGTGgtaagaaagg ... cttattttagGCTACCGCTCAACCTTCATATTTTGTCGCAGAAGAGCCTGAAGATGACAAC
EST: CACTTATGAAGACTCAGGGAATGATTCAGTG GCTACCGCTCAACCTTCATATTTTGTCGCAGAAGAGCCTGAAGATGACAACEST: gi|29686213|gb|CB682488.1|CB682488
genomic: CACTTATGAAGACTCAGGGAATGATTCAGTGgtaagaaagg ... cttattttagGCTACCGCTCAACCTTCATATTTTGTCGCAGAAGAGCCTGAAGATGACAAC
EST: AGGATATACCAGACATGGACACTTATGAAGACTCAGGGAATGATTCAGTG GCTACCGCTCAACCTTCATATTTTGTCGCAGAAGAGCCTGAAGATGACAAC
genomic: AGGATATACCAGACATGGACACTTATGAAGACTCAGGGAATGATTCAGTGgtaagaaagg ... cttattttagGCTACCGCTCAACCTTCATATTTTGTCGCAGAAGAGCCTGAAGATGACAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGTCTATTCCCTCATATTTCAGTGCTGGTAAGAAGGCTGAAGAAGAGGAGGATATACCAGACATGGACACTTATGAAGACTCAGGGAATGATTCAGTGgtaagaaaggctgtgatcctttcttcgatgtggttaaggaaggctcataatgttcatagtcattactgattccagctttgccttcgtcatcttattttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA