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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCTGCTCCATGGGACGCTGCACGCCACCATCTTCGAGGCGGCGTCGCTCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggacccttctccttaatctactcgtctttgctcttgctctttttcttttttgtccctttcttgtgtgtgcgtttgcatgagcccgaatttgatctg...

Basic information

species Oryza sativa
transcript LOC_Os01g07760.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g07760.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G061969_T01 (Zea mays), 5'ss of exon 2
GATGCTGCTCCATGGGACGCTGCACGCCACCATCTTCGAGGCGGCGTCGCTCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggacccttctccttaatctactcgtctttgctcttgctctttttcttttttgtccctttcttgtgtgtgcgtttgcatga-gcccgaatttgatctg
|||  ||||||| || ||||| |||||||||||||||||||| | |||||||||||||||||||||||||| |||  ||||||||||||||||||||||||| || ||  |    | |   || ||| || | | || |        | ||  | |   | |  |||  |    |   |  |   |  | |   || ||  
GATCTTGCTCCACGGCACGCTCCACGCCACCATCTTCGAGGCCGAGTCGCTCTCCAACCCGCACCGCGCCACCGGCGGCGCCCCCAAGTTCATCCGCAAGgtacgtacagtcagtccttcactcctc-tcctcggtcgtatctccactgttgatcgcttcatcattgactaccagccggactactgttctagcatgctcaa

upper sequence: LOC_Os01g07760.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G054559_T07 (Zea mays), 5'ss of exon 2
GATGCTGCTCCATGGGACGCTGCACGCCACCATCTTCGAGGCGGCGTCGCTCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggacc--cttctccttaatctactcgtctttgctcttgctctttt-tcttttttgtccc-tttcttgtgtgtgcgtttgcatgagcccgaatttgatctg
|||  ||||||| || ||||| |||||||||||||||||||| | ||||||||||||||||||||||||||  ||  ||||||||||||||||||||||||| |   ||    || |||| | || |||  |||| || |  | |     ||| ||   | || ||||    | |  ||  |       |  | ||   |||  
GATCTTGCTCCACGGCACGCTCCACGCCACCATCTTCGAGGCCGAGTCGCTCTCCAACCCGCACCGCGCCACTGGCGGCGCCCCCAAGTTCATCCGCAAGgtactccccggtctccccttcaccttctc-cctttcctgtcacgcaacgatctcttccattccatttccaccgcgcccgacttggcattctagcatcc-atc--

upper sequence: LOC_Os01g07760.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G061969_T02 (Zea mays), 5'ss of exon 2
GATGCTGCTCCATGGGACGCTGCACGCCACCATCTTCGAGGCGGCGTCGCTCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggacccttctccttaatctactcgtctttgctcttgctctttttcttttttgtccctttcttgtgtgtgcgtttgcatgagcccgaatttgatctg
|||  ||||||| || ||||| |||||||||||||||||||| | |||||||||||||||||||||||||| |||  ||||||||||||||||||||||||| || ||  |    | |   || ||| || | | || |        | ||  | |   | |  |||  |    |                         
GATCTTGCTCCACGGCACGCTCCACGCCACCATCTTCGAGGCCGAGTCGCTCTCCAACCCGCACCGCGCCACCGGCGGCGCCCCCAAGTTCATCCGCAAGgtacgtacagtcagtccttcactcctc-tcctcggtcgtatctccactgttgatcgcttcatcattgactaccag-------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88392732|gb|CI623963.1|CI623963
EST:     TGTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88725244|gb|CI748503.1|CI748503
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88761512|gb|CI771068.1|CI771068
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88315650|gb|CI615522.1|CI615522
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88432310|gb|CI565343.1|CI565343
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88400621|gb|CI596042.1|CI596042
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88389282|gb|CI598080.1|CI598080
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|13896144|gb|AU182480.1|AU182480
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88398789|gb|CI601125.1|CI601125
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88365109|gb|CI616528.1|CI616528
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88732760|gb|CI755937.1|CI755937
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAA
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAA
EST: gi|88347274|gb|CI632559.1|CI632559
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|58598740|gb|CK009268.1|CK009268
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88360793|gb|CI647803.1|CI647803
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|29622268|gb|CB627279.1|CB627279
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88372589|gb|CI610912.1|CI610912
EST:     TCTCCAACCCGCACCGCGCAAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88311884|gb|CI577490.1|CI577490
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|29635562|gb|CB640571.1|CB640571
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88744148|gb|CI767508.1|CI767508
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCCAC-AA
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCC-ACCAA
EST: gi|88398487|gb|CI595888.1|CI595888
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88314768|gb|CI608227.1|CI608227
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTT-ATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88368045|gb|CI572766.1|CI572766
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88409864|gb|CI571121.1|CI571121
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88352503|gb|CI654328.1|CI654328
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88741551|gb|CI765059.1|CI765059
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88405592|gb|CI588798.1|CI588798
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88730406|gb|CI754019.1|CI754019
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88403010|gb|CI568784.1|CI568784
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|29633779|gb|CB638788.1|CB638788
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|29635650|gb|CB640659.1|CB640659
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAACGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|58658982|gb|CK047662.1|CK047662
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88570417|gb|CI661790.1|CI661790
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG