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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tacaaatctattgctgtatgctatgtgtgtctgtatcacctgaaatgcaatgtcttcttctttgttgttcttgatctaacacgtgagctcatgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAGGTGTATTCTACCATTGATCTGGAGAAAGCTCGTGTAGGGCGAACTAGGA

Basic information

species Oryza sativa
transcript LOC_Os01g07760.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g07760.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G054559_T04 (Zea mays), 3'ss of exon 1
----------------------------------------------------------------------tacaaatctattgctgtatgctatgtgtgtctgtatcacctgaaatgcaatgtcttcttctttgttgttcttgatctaacacgtgag-ctcatgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAGGTGTATTCTACCATTGATCTGGAGAAAGCTCGTGTAGGGCGAACTAGGA
                                                                       |  | ||||||   |  |  | |    || ||  |  |  |     ||  |  ||| |||||     |  | |  | ||| ||  | ||| | || |||| ||||||| ||||| |||||||| |||||||||||||| |||||||||||| | ||| | ||| | ||||| ||||| || ||||| ||||| ||  |||
gttactgttctacgtaattttgctcaagagagcttttttttcccctgcagtcactggagtagttcccttcgatcagtctattttaggctcgtctcgaagtatgcctgcctcgtgtctcaccggattcgtcttttgctctgctaacatgacatgttcgtctcgtttcgacagCTTGTGGAAGGGATCGAGGACACCGTGGGTGTCGGCAAGGGCGCCACCAAGATATATGCCACCGTCGATCTCGAGAAGGCCCGTGTCGGGCGGACCCGGA

upper sequence: LOC_Os01g07760.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G061969_T01 (Zea mays), 3'ss of exon 2
tacaaatctattgctgtatgctatgtgtgtctgt-atcacctgaaatgcaatgtcttcttctttgttgtt--cttgatctaa-cacgtgagctcatgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAGGTGTATTCTACCATTGATCTGGAGAAAGCTCGTGTAGGGCGAACTAGGA
  | |  |||     || | | | || || || |  |   || |      || || |||  |    || |  |  || ||   |   |   ||| | ||  ||| ||||||| ||||||||||| || |||||| ||||||| ||| |||||||| | ||  | ||| ||||||||||||| || || || ||||| ||  |||
-tctaccctaggctcgtct-ccaagtatgcctctcgttgtctca--ccggatttcctctcttgctctgctaacacgacctgttcgtttcgtctcgtttcggcagCTTGTGGAAGGGATTGAGGATACCGTGGGTATCGGCAAGGGCACCACCAAGATATACGCCACCGTTGATCTGGAGAAGGCCCGCGTGGGGCGCACCCGGA

upper sequence: LOC_Os01g07760.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G054559_T07 (Zea mays), 3'ss of exon 2
tacaaatctattgctgtatgctatgtgtgtctgtatcacctgaaatgcaatgtcttcttctttgttgttcttgatctaacacgtgag-ctcatgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAGGTGTATTCTACCATTGATCTGGAGAAAGCTCGTGTAGGGCGAACTAGGA
 |  | ||||||   |  |  | |    || ||  |  |  |     ||  |  ||| |||||     |  | |  | ||| ||  | ||| | || |||| ||||||| ||||| |||||||| |||||||||||||| |||||||||||| | ||| | ||| | ||||| ||||| || ||||| ||||| ||  |||
-atcagtctattttaggctcgtctcgaagtatgcctgcctcgtgtctcaccggattcgtcttttgctctgctaacatgacatgttcgtctcgtttcgacagCTTGTGGAAGGGATCGAGGACACCGTGGGTGTCGGCAAGGGCGCCACCAAGATATATGCCACCGTCGATCTCGAGAAGGCCCGTGTCGGGCGGACCCGGA

upper sequence: LOC_Os01g07760.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G061969_T02 (Zea mays), 3'ss of exon 3
tacaaatctattgctgtatgctatgtgtgtctgtatcacctgaaatgcaatgtcttcttctttgttgttcttgatctaa-cacgtgagctcatgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAGGTGTATTCTACCATTGATCTGGAGAAAGCTCGTGTAGGGCGAACTAGGA
               ||||||     ||   ||| ||||| ||  | |    |||  | || || |   |  || ||   |   |   ||| | ||  ||| ||||||| ||||||||||| || |||||| ||||||| ||| |||||||| | ||  | ||| ||||||||||||| || || || ||||| ||  |||
---------------gtatgcctctcgt---tgtctcaccggatttcc----tctcttgctctgctaa-cacgacctgttcgtttcgtctcgtttcggcagCTTGTGGAAGGGATTGAGGATACCGTGGGTATCGGCAAGGGCACCACCAAGATATACGCCACCGTTGATCTGGAGAAGGCCCGCGTGGGGCGCACCCGGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88392732|gb|CI623963.1|CI623963
EST:     TGTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88725244|gb|CI748503.1|CI748503
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88761512|gb|CI771068.1|CI771068
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88315650|gb|CI615522.1|CI615522
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88432310|gb|CI565343.1|CI565343
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88400621|gb|CI596042.1|CI596042
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88389282|gb|CI598080.1|CI598080
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|13896144|gb|AU182480.1|AU182480
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88398789|gb|CI601125.1|CI601125
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88365109|gb|CI616528.1|CI616528
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88732760|gb|CI755937.1|CI755937
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAA
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAA
EST: gi|88347274|gb|CI632559.1|CI632559
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|58598740|gb|CK009268.1|CK009268
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88360793|gb|CI647803.1|CI647803
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|29622268|gb|CB627279.1|CB627279
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88372589|gb|CI610912.1|CI610912
EST:     TCTCCAACCCGCACCGCGCAAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88311884|gb|CI577490.1|CI577490
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|29635562|gb|CB640571.1|CB640571
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88744148|gb|CI767508.1|CI767508
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCCAC-AA
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCC-ACCAA
EST: gi|88398487|gb|CI595888.1|CI595888
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88314768|gb|CI608227.1|CI608227
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTT-ATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88368045|gb|CI572766.1|CI572766
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88409864|gb|CI571121.1|CI571121
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88352503|gb|CI654328.1|CI654328
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88741551|gb|CI765059.1|CI765059
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88405592|gb|CI588798.1|CI588798
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88730406|gb|CI754019.1|CI754019
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88403010|gb|CI568784.1|CI568784
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|29633779|gb|CB638788.1|CB638788
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|29635650|gb|CB640659.1|CB640659
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAACGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|58658982|gb|CK047662.1|CK047662
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
EST: gi|88570417|gb|CI661790.1|CI661790
EST:     TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAG                         TTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG
genomic: TCTCCAACCCGCACCGCGCCAGCGGAAGCGCCCCCAAGTTCATCCGCAAGgttcggaccc ... atgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcaatgtcttcttctttgttgttcttgatctaacacgtgagctcatgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAGGTGTATTCTACCATTGATCTGGAGAAAGCTCGTGTAGGGCGAACTAGGA
                            atctaac  putative branch site (score: 2)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tacaaatctattgctgtatgctatgtgtgtctgtatcacctgaaatgcaatgtcttcttctttgttgttcttgatctaacacgtgagctcatgtcaacagTTTGTGGAGGGGATTGAGGACACTGTGGGTGTCGGCAAAGGCGCCACCAAGGTGTATTCTACCATTGATCTGGAGAAAGCTCGTGTAGGGCGAACTAGGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA