Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcccagtgtgcttaggctaagcgcactagagcttcttgctcgcttgcttcttctccgctcagatctgcttgcttgcttgcttcgctagaaccctactctgtgctgcgagtgtcgctgcttcgtcttccttcctcaagttcgatctgattgtgtgtgtgggggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCTGCTCCATGGGACGCTGCACGCCACCATCTTCGAGGCGGCGTCGCTCTCC

Basic information

species Oryza sativa
transcript LOC_Os01g07760.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g07760.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G061969_T02 (Zea mays), 3'ss of exon 1
-----------gtaagcccagtgtgct-taggctaagcgcactagag-cttcttgctcgcttgcttcttctccgc--tcagatctgcttgcttgc---ttgcttcgctagaaccctactctgtgctgcgagtgtcgctgcttcgtcttcc------ttcctcaagttcgatctgatt-gtgtgtgtgggggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCTGCTCCATGGGACGCTGCACGCCACCATCTTCGAGGCGGCGTCGCTCTCC
           |    |||  ||  |  | ||||     | ||   | |||  || ||| ||     ||   ||      ||||||| |||  ||    |  ||   |     ||  || |     | | ||||| |||    |||   |      |||| |  |   |   || |  |  |  |  ||  |  || | |   ||    |||  | ||    | |    |  |||||||| |||||  ||||||| || ||||| |||||||||||||||||||| |           
gtggggcgcaggggcacccgttgctccgttggctggcgccgctgccgtctttctgttcgtttcgccgttgcgcggggctcgatctgcgtgcgcgcggcctatttgcttgctgtccggctgtccctagtgtgtgtc-ctgtcctgtcgctcacgctcttccgcgggcgtgcgttgttccgcttccgcagGACGCTGCTGCTGCTGCTGCTAGGCTGACAGCGACGACGAGGGGGCCATGGCTCAGATCTTGCTCCACGGCACGCTCCACGCCACCATCTTCGAGGCCGA----------

upper sequence: LOC_Os01g07760.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G054559_T07 (Zea mays), 3'ss of exon 1
gtaagcccagtgtgcttaggctaagcgcactagagcttcttgctcgcttgcttcttctccgctcagatctgcttgcttgcttgcttcgctagaaccctactctgtgctgcgagtgtcgctgcttcgtcttccttcctcaagttcg-atctgattgtgtgtgtggggg--------ggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCTGCTCCATGGGACGCTGCACGCCACCATCTTCGAGGCGGCGTCGCTCTCC
         ||| |   ||||        ||       || || |   |||    | |||| ||     | |  |  ||| || |  ||  |   |||  |   |  | ||  |||| ||    ||| | |  |||||  | ||    |     | |  |  |  ||        |  || ||||||  ||  || |||    |    |    |  |||||||| |||||  ||||||| || ||||| ||||||||||||||||||               
---------gtgggggcaggcagccgttgctccgttggctggcacagctgccgtctttccgttcg---tttcgcggctgcgtg-tctgcgcgtggcctctttacttgtccggttgtccctagcgcgtgtcctgtcctcttgctcatgcccttccgcgcttccgcagGACGCTGCTGCTGCTGGTAGGCTGAC-AGCGAGGAGGACGAGACGAGGGGGCCATGGCTCAGATCTTGCTCCACGGCACGCTCCACGCCACCATCTTCGAG---------------

upper sequence: LOC_Os01g07760.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G061969_T01 (Zea mays), 3'ss of exon 1
gtaagcccagtgtgcttaggctaagcgcactagagcttcttgctcgcttgcttcttctccgctcagatctgcttgcttgcttgcttcgctagaaccctactctgtgctgcgagtgtcgctgcttcgtcttccttcctcaagttcgatctgatt-gtgtgtgtgggggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCTGCTCCATGGGACGCTGCACGCCACCATCTTCGAGGCGGCGTCGCTCTCC
                                                         | ||| | |  ||  ||||||||| |    |||    ||||| | ||||      ||   |  |||    |   ||||| |  |   |   || |  |  |  |  ||  |  || | |   ||    |||  | ||    | |    |  |||||||| |||||  ||||||| || ||||| |||||||||||||||||||| |           
--------------------------------------------------------gtgcgcgc-ggcctatttgcttgct-gtccggctg--tccctagtgtgtgtcct--gtcctgtcgctca--cgctcttccgcgggcgtgcgttgttccgcttccgcagGACGCTGCTGCTGCTGCTGCTAGGCTGACAGCGACGACGAGGGGGCCATGGCTCAGATCTTGCTCCACGGCACGCTCCACGCCACCATCTTCGAGGCCGA----------

upper sequence: LOC_Os01g07760.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G054559_T01 (Zea mays), 3'ss of exon 1
gtaagcccagtgtgcttaggctaagcgcactagagcttcttgctcgcttgcttcttctccgctca-gatctgcttgcttgcttgcttcgctagaaccc-tactctgtgctgcgagtgtcgctgcttcgtcttccttcctcaagttcgatctgattgtgtgtgtgggggggc-gcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCTGCTCCATGGGACGCTGCACGCCACCATCTTCGAGGCGGCGTCGCTCTCC
                                       | | |     ||| | | || || |  |  ||  || ||||   | ||  |   | | | |   |||| ||     ||    |||     |   ||||| || |      ||| |  ||   || ||  | | ||  | ||| ||||  | | |                 |||||||| |||||  ||||||| || ||||| ||||||||||||||||||               
---------------------------------------tcgtttcgcggctgcgtgtctgcgcgtggcctctttacttgtccggttgtccctagcgcgtgtcctgtcctct---tgctcatgcccttccgcgcttccgcagGACG---CTGCTGCTGCTGGTAGGCTGACAGCGAGGAGGACGAGACGAGGG----------------GGCCATGGCTCAGATCTTGCTCCACGGCACGCTCCACGCCACCATCTTCGAG---------------

upper sequence: LOC_Os01g07760.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G054559_T02 (Zea mays), 3'ss of exon 1
gtaagcccagtgtgcttaggctaagcgcactagagcttcttgctcgcttgcttcttctccgctcagatctgcttgcttgcttgcttcgctagaaccc-tactctgtgctgcgagtgtcgctgcttcgtcttccttcctcaagttcgatctgattgtgtgtgtgggggggc-gcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCTGCTCCATGGGACGCTGCACGCCACCATCTTCGAGGCGGCGTCGCTCTCC
                                  | |  || | ||  ||| | | || |||   |  ||  || ||||   | ||  |   | | | |   |||| ||     ||    |||     |   ||||| || |      ||| |  ||   || ||  | | ||  | ||| ||||  | | |                 |||||||| |||||  ||||||| || ||||| ||||||||||||||||||               
----------------------------------gttcgtttcgcggctgcgtgt-ctgcgcgt-ggcctctttacttgtccggttgtccctagcgcgtgtcctgtcctct---tgctcatgcccttccgcgcttccgcagGACG---CTGCTGCTGCTGGTAGGCTGACAGCGAGGAGGACGAGACGAGGG----------------GGCCATGGCTCAGATCTTGCTCCACGGCACGCTCCACGCCACCATCTTCGAG---------------

upper sequence: LOC_Os01g07760.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA07G03490.1 (Glycine max), 3'ss of exon 1
gtaagcccagtgtgcttaggctaagcgcactagagcttcttgctcgcttgcttcttctccgctcagatctgcttgcttgcttgcttcgctagaaccctactctgtgct-gcgagtgtcgctgcttcgtcttccttcctcaagttcgatctgattgtgtgtgtgggggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCTGCTCCATGG-GACGCTGCACGCCACCATCTTCGAGGCGGCGTCGCTCTCC
                                                    |    ||||||  ||| |  ||    |||   || || |      |  |   |||| | | |    | |||   ||     |  || || ||     || | |   ||| | |  ||||||  |   ||     ||||  |   ||||   || || |   |  |  |||   |||| |||  |  | ||   ||  | || ||    ||             
----------------------------------------------------taaattccgctt-gatttttttatgggctgcttttgcaactgtttt-ttacatgctcgtgtgatctgatgcgaagtggggttctctgaatttg----tgttggcagGTGAGAGATGGCGCAAATTCTGCTTCATGGGACTC---TCCATGCCACCATCTTCGAGGTTGATAG-GCTCAATGCTGGTGGTGGTGGCGGCAATTTTTTCAGC-------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88392732|gb|CI623963.1|CI623963
EST:     CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCG                         GTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
genomic: CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCGgtaagcccag ... gggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
EST: gi|88725244|gb|CI748503.1|CI748503
EST:     CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGNCGATCACCACCCG                         GTAGGGCGAGGAGGGAGCCAAATCNAAATCAGCAGCCATGGCGCAGATGCT
genomic: CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCGgtaagcccag ... gggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
EST: gi|88761512|gb|CI771068.1|CI771068
EST:     CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCG                         GTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
genomic: CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCGgtaagcccag ... gggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
EST: gi|88315650|gb|CI615522.1|CI615522
EST:     CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCG                         GTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
genomic: CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCGgtaagcccag ... gggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
EST: gi|88432310|gb|CI565343.1|CI565343
EST:     CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCG                         GTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
genomic: CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCGgtaagcccag ... gggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
EST: gi|88400621|gb|CI596042.1|CI596042
EST:     CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCG                         GTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
genomic: CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCGgtaagcccag ... gggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
EST: gi|88389282|gb|CI598080.1|CI598080
EST:     CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCG                         GTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
genomic: CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCGgtaagcccag ... gggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
EST: gi|88398789|gb|CI601125.1|CI601125
EST:     CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCG                         GTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
genomic: CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCGgtaagcccag ... gggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
EST: gi|88365109|gb|CI616528.1|CI616528
EST:     CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCG                         GTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
genomic: CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCGgtaagcccag ... gggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
EST: gi|88732760|gb|CI755937.1|CI755937
EST:     CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCG                         GTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
genomic: CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCGgtaagcccag ... gggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
EST: gi|88347274|gb|CI632559.1|CI632559
EST:     CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCG                         GTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
genomic: CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCGgtaagcccag ... gggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
EST: gi|58598740|gb|CK009268.1|CK009268
EST:     CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCG                         GTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
genomic: CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCGgtaagcccag ... gggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
EST: gi|88360793|gb|CI647803.1|CI647803
EST:     CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCG                         GTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
genomic: CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCGgtaagcccag ... gggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
EST: gi|29622268|gb|CB627279.1|CB627279
EST:     CCTCCGCCGATCACCGCCCG                         GCTAGGGCGAGGAGGGAGCCAAATCCAAATGAGCAGCCATGGCGCATATGC
genomic: CCTCCGCCGATCACCACCCGgtaagcccag ... gggggcgcagG-TAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGC
EST: gi|88372589|gb|CI610912.1|CI610912
EST:     CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCG                         GTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
genomic: CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCGgtaagcccag ... gggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
EST: gi|88311884|gb|CI577490.1|CI577490
EST:     CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCG                         GTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
genomic: CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCGgtaagcccag ... gggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
EST: gi|29635562|gb|CB640571.1|CB640571
EST:     CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCG                         GTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
genomic: CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCGgtaagcccag ... gggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
EST: gi|88744148|gb|CI767508.1|CI767508
EST:     CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCG                         GTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
genomic: CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCGgtaagcccag ... gggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
EST: gi|88398487|gb|CI595888.1|CI595888
EST:     CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCG                         GTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
genomic: CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCGgtaagcccag ... gggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
EST: gi|88314768|gb|CI608227.1|CI608227
EST:     CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGGCGATCACCACCCG                         GTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
genomic: CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCGgtaagcccag ... gggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
EST: gi|88368045|gb|CI572766.1|CI572766
EST:     CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCG                         GTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
genomic: CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCGgtaagcccag ... gggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
EST: gi|88409864|gb|CI571121.1|CI571121
EST:     CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGACGATCACCACCCG                         GTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
genomic: CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCGgtaagcccag ... gggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
EST: gi|88352503|gb|CI654328.1|CI654328
EST:     CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCG                         GTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
genomic: CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCGgtaagcccag ... gggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
EST: gi|88741551|gb|CI765059.1|CI765059
EST:     CCTCCTCTCCCTTCCCGGGGAAGACGCCTCCCTCCGCCGATCACCACCCG                         GTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
genomic: CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCGgtaagcccag ... gggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
EST: gi|88405592|gb|CI588798.1|CI588798
EST:     CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCG                         GTAGGGCGAGGAGGGAGCCAAATCC-AATCAGCAGCCATGGCGCAGATGCT
genomic: CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCGgtaagcccag ... gggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
EST: gi|88730406|gb|CI754019.1|CI754019
EST:     CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCG                         GTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
genomic: CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCGgtaagcccag ... gggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
EST: gi|88403010|gb|CI568784.1|CI568784
EST:     CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCG                         GTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
genomic: CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCGgtaagcccag ... gggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
EST: gi|29633779|gb|CB638788.1|CB638788
EST:     GCCTCCCTCCGCCGATCACCACCCG                         GTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
genomic: GCCTCCCTCCGCCGATCACCACCCGgtaagcccag ... gggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
EST: gi|29635650|gb|CB640659.1|CB640659
EST:     CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCG                         GTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
genomic: CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCGgtaagcccag ... gggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
EST: gi|58658982|gb|CK047662.1|CK047662
EST:     CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCG                         GTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
genomic: CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCGgtaagcccag ... gggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
EST: gi|88570417|gb|CI661790.1|CI661790
EST:     CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCG                         GTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT
genomic: CCTCCTCTCCCTTCCCGGAGAAGACGCCTCCCTCCGCCGATCACCACCCGgtaagcccag ... gggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcttcgtcttccttcctcaagttcgatctgattgtgtgtgtgggggggcgcagGTAGGGCGAGGAGGGAGCCAAATCCAAATCAGCAGCCATGGCGCAGATGCTGCTCCATGGGACGCTGCACGCCACCATCTTCGAGGCGGCGTCGCTCTCC
                           atctgat  putative branch site (score: 4)