1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TACAAGCACTGGCCAGCTTAATATCGACCGATTTGCTTGGATGTCTGAACAGTCTAATGATGCAAAGACAAATGCAAAGACAACACCATTTCCTGCACAGgtataatagaaacaacatatactggtctttgttctggttatagtttcataagcattgtgagtatttgtgttcttcag
species | Oryza sativa |
transcript | LOC_Os01g07140.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGTCTAATGATGCAAAGACAAATGCAAAGACAACACCATTTCCTGCACAG GTCCGCTTCTCTACCAGGACAGAGTGCCCTCCACTTCCAGAAAGCAAATACEST: gi|29633284|gb|CB638293.1|CB638293
genomic: AGTCTAATGATGCAAAGACAAATGCAAAGACAACACCATTTCCTGCACAGgtataataga ... tgttcttcagGTCCGCTTCTCTACCAGGACAGAGTGCCCTCCACTTCCAGAAAGCAAATAC
EST: AGTCTAATGATGCAAAGACAAATGCAAAGACAACACCATTTCCTGCACAG GTCCGCTTCTCTACCAGGACAGAGTGCCCTCCACTTCCAGAAAGCAAATACEST: gi|29633138|gb|CB638147.1|CB638147
genomic: AGTCTAATGATGCAAAGACAAATGCAAAGACAACACCATTTCCTGCACAGgtataataga ... tgttcttcagGTCCGCTTCTCTACCAGGACAGAGTGCCCTCCACTTCCAGAAAGCAAATAC
EST: AGTCTAATGATGCAAAGACAAATGCAAAGACAACACCATTTCCTGCACAG GTCCGCTTCTCTACCAAGACAGAGTGCCCTCCACTTCCAGAAAGCAAATACEST: gi|58663097|gb|CK051783.1|CK051783
genomic: AGTCTAATGATGCAAAGACAAATGCAAAGACAACACCATTTCCTGCACAGgtataataga ... tgttcttcagGTCCGCTTCTCTACCAGGACAGAGTGCCCTCCACTTCCAGAAAGCAAATAC
EST: AGTCTAATGATGCAAAGACAAATGCAAAGACAACACCATTTCCTGCACAG GTCCGCTTCTCTACCAGGACAGAGTGCCCTCCACTTCCAGAAAGCAAATACEST: gi|58670252|gb|CK058938.1|CK058938
genomic: AGTCTAATGATGCAAAGACAAATGCAAAGACAACACCATTTCCTGCACAGgtataataga ... tgttcttcagGTCCGCTTCTCTACCAGGACAGAGTGCCCTCCACTTCCAGAAAGCAAATAC
EST: AGTCTAATGATGCAAAGACAAATGCAAAGACAACACCATTTCCTGCACAG GTCCGCTTCTCTACCAGGACAGAGTGCCCTCCACTTCCAGAAAGCAAATAC
genomic: AGTCTAATGATGCAAAGACAAATGCAAAGACAACACCATTTCCTGCACAGgtataataga ... tgttcttcagGTCCGCTTCTCTACCAGGACAGAGTGCCCTCCACTTCCAGAAAGCAAATAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACAAGCACTGGCCAGCTTAATATCGACCGATTTGCTTGGATGTCTGAACAGTCTAATGATGCAAAGACAAATGCAAAGACAACACCATTTCCTGCACAGgtataatagaaacaacatatactggtctttgttctggttatagtttcataagcattgtgagtatttgtgttcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG