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gtgagttctttcccaagatcactctctccatcatccattgctgttgcttcaactcgccgaactctcacatccttctctcgttttattttgttttgttttttatttcacagGTTGAGGTTTACAAGGAGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCATTCGGGAAGAGAGCTTTCGCATGCGCCGTTGCCATTTGACAGGATTGCA
species | Oryza sativa |
transcript | LOC_Os01g07140.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAGTGAAGAATACGTTGAAACT GTTGAGGTTTACAAGGAGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCAEST: gi|87013903|gb|CI271294.1|CI271294
genomic: CAGTGAAGAATACGTTGAAACTgtgagttctt ... tatttcacagGTTGAGGTTTACAAGGAGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCA
EST: ACGCATACCTCATTGGTGGTATCCAAAGCAGTGAAGAATACGTTGAAACT GTTGAGGTTTACAAGGAGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCAEST: gi|86827243|gb|CI270916.1|CI270916
genomic: ACGCATACCTCATTGGTGGTATCCAAAGCAGTGAAGAATACGTTGAAACTgtgagttctt ... tatttcacagGTTGAGGTTTACAAGGAGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCA
EST: ACGCATACCTCATTGGTGGTATCCAAAGCAGTGAAGAATACGTTGAAACT GTTGAGGTTTACAAGGAGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCAEST: gi|88529458|gb|CI457775.1|CI457775
genomic: ACGCATACCTCATTGGTGGTATCCAAAGCAGTGAAGAATACGTTGAAACTgtgagttctt ... tatttcacagGTTGAGGTTTACAAGGAGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCA
EST: AATACGTTGAAACT GTTGAGGTTTACAAGGAGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCAEST: gi|8956551|gb|BE230466.1|BE230466
genomic: AATACGTTGAAACTgtgagttctt ... tatttcacagGTTGAGGTTTACAAGGAGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCA
EST: ACGCATACCTCATTGGTGGTATCCAAAGCAGTGAAGAATACGTTGAAACT GTTGAGGTTTACAAGGAGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCAEST: gi|86502513|gb|CI145146.1|CI145146
genomic: ACGCATACCTCATTGGTGGTATCCAAAGCAGTGAAGAATACGTTGAAACTgtgagttctt ... tatttcacagGTTGAGGTTTACAAGGAGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCA
EST: ACGCATACCTCATTGGTGGTATCCAAAGCAGTGAAGAATACGTTGAAACT GTTGAGGTTTACAAGGAGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCAEST: gi|33809643|gb|CF330713.1|CF330713
genomic: ACGCATACCTCATTGGTGGTATCCAAAGCAGTGAAGAATACGTTGAAACTgtgagttctt ... tatttcacagGTTGAGGTTTACAAGGAGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCA
EST: ACGCATACCTCATTGGTGGTATCCAAAGCAGTGAAGAATACGTTGAAACT GTTGAGGTTTACAAGGAGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCA
genomic: ACGCATACCTCATTGGTGGTATCCAAAGCAGTGAAGAATACGTTGAAACTgtgagttctt ... tatttcacagGTTGAGGTTTACAAGGAGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCA
gccgaactctcacatccttctctcgttttattttgttttgttttttatttcacagGTTGAGGTTTACAAGGAGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCATTCGGGAAGAGAGCTTTCGCATGCGCCGTTGCCATTTGACAGGATTGCA
ctctcac putative branch site (score: 6)
tccttctctcgtttta CT-rich tract
ttttattttgttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttctttcccaagatcactctctccatcatccattgctgttgcttcaactcgccgaactctcacatccttctctcgttttattttgttttgttttttatttcacagGTTGAGGTTTACAAGGAGGGCCAAGGCTGGTCCATCTCTGGTTCCAAGGCATTCGGGAAGAGAGCTTTCGCATGCGCCGTTGCCATTTGACAGGATTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT