1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgcttttgaacctcacatggcttttaaccctattatattctggttttgatttttacaaaaatatcttgaatagATTTAAACAGCTGAAAGAAGAGGAGAGCAAGAGAAAAGGCAACAAAGCGCTTGCTGCAGGAGATTCAGATCTTTCAGCCTCAACATCAGAGGATGAAGAG
species | Oryza sativa |
transcript | LOC_Os01g05800.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCAGGACGAGCAAAACGTACGAGTGCTCAACCAGCCCCACCTGGTGAAAG ATTTAAGCAGCTGAAAGAAGAGGAGAGCAAGAGAAAAGGCAACAAAGCGCTEST: gi|4714906|gb|AU056023.1|AU056023
genomic: GCAGGACGAGCAAAACGTACGAGTGCTCAACCAGCCCAACCTGGTGAAAGgtgcttttga ... tcttgaatagATTTAAACAGCTGAAAGAAGAGGAGAGCAAGAGAAAAGGCAACAAAGCGCT
EST: GTACGAGTGCTCAACCAGCCCAACCTGGTGAAAG ATTTAAACAGCTGAAAGNAGAGGAGAGCAAGAGAAAAGGCAACAAAGCGCTEST: gi|66920591|gb|CX107439.1|CX107439
genomic: GTACGAGTGCTCAACCAGCCCAACCTGGTGAAAGgtgcttttga ... tcttgaatagATTTAAACAGCTGAAAGAAGAGGAGAGCAAGAGAAAAGGCAACAAAGCGCT
EST: GCAGGACGAGCAAAACGTACGAGTGCTCAACCAGCCCAACCTGGTGAAAG ATTTAAGCAGCTGAAAGAAGAGGAGAGCAAGAGAAAAGGCAACAAAGCGCTEST: gi|14713818|gb|AU197781.1|AU197781
genomic: GCAGGACGAGCAAAACGTACGAGTGCTCAACCAGCCCAACCTGGTGAAAGgtgcttttga ... tcttgaatagATTTAAACAGCTGAAAGAAGAGGAGAGCAAGAGAAAAGGCAACAAAGCGCT
EST: GCAGGACGAGCAAAACGTACGAGTGCTCAACCAGCCCAACCTGGTGAAAG ATTTAAACAGCTGAAAGAAGAGGAGAGCAAGAGAAAAGGCAACAAAGCGCTEST: gi|38482468|gb|CF966504.1|CF966504
genomic: GCAGGACGAGCAAAACGTACGAGTGCTCAACCAGCCCAACCTGGTGAAAGgtgcttttga ... tcttgaatagATTTAAACAGCTGAAAGAAGAGGAGAGCAAGAGAAAAGGCAACAAAGCGCT
EST: GCAGGACGAGCAAAACGTACGAGTGCTCAACCAGCCCAACCTGGTGAAAG ATTTAAGCAGCTGAAAGAAGAGGAGAGCAAGAGAAAAGGEST: gi|29620328|gb|CB625340.1|CB625340
genomic: GCAGGACGAGCAAAACGTACGAGTGCTCAACCAGCCCAACCTGGTGAAAGgtgcttttga ... tcttgaatagATTTAAACAGCTGAAAGAAGAGGAGAGCAAGAGAAAAGG
EST: GCAGGACGAGCAAAACGTACGAGTGCTCAACCAGCCCAACCTGGTGAAAG ATTTAAGCAGCTGAAAGAAGAGGAGAGCAAGAGAAAAGGCAACAAAGCGCT
genomic: GCAGGACGAGCAAAACGTACGAGTGCTCAACCAGCCCAACCTGGTGAAAGgtgcttttga ... tcttgaatagATTTAAACAGCTGAAAGAAGAGGAGAGCAAGAGAAAAGGCAACAAAGCGCT
ggcttttaaccctattatattctggttttgatttttacaaaaatatcttgaatagATTTAAACAGCTGAAAGAAGAGGAGAGCAAGAGAAAAGGCAACAAAGCGCTTGCTGCAGGAGATTCAGATCTTTCAGCCTCAACATCAGAGGATGAAGAG
tattatattctggttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcttttgaacctcacatggcttttaaccctattatattctggttttgatttttacaaaaatatcttgaatagATTTAAACAGCTGAAAGAAGAGGAGAGCAAGAGAAAAGGCAACAAAGCGCTTGCTGCAGGAGATTCAGATCTTTCAGCCTCAACATCAGAGGATGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA