1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaaatgataaaatctggtctattttttaattaatgagtaacatggatatggtgggttgagagttgtgctgtttttcctctctttttttagGTCGAATCAACTCTGGCTATGCAGAATTTACAGCCACAGATCAAAGCAATTCAACAGAGATATGCAGGAAATCAG
species | Oryza sativa |
transcript | LOC_Os01g05800.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCCCTCTGGAATTGTGAAGGCTGCAACATTACCTTTAACGAAACAGCAG GTCGAATCAACTCTGGCTATGCAGAATTTACAGCCACAGATCAAAGCAATTEST: gi|13896049|gb|AU182385.1|AU182385
genomic: TTCTCACTGTTATTGTGAAGGCTGCAACATTACCTTTAACGAAACAACAGgtaaatgata ... ctttttttagGTCGAATCAACTCTGGCTATGCAGAATTTACAGCCACAGATCAAAGCAATT
EST: TTCTCACTGTTATTGTGAAGGCTGCAACATTACCTTTAACGAAACAACAG GTCGAATCAACTCTGGCTATGCAGAATTTACAGCCACAGATCAAAGCAATTEST: gi|29620327|gb|CB625339.1|CB625339
genomic: TTCTCACTGTTATTGTGAAGGCTGCAACATTACCTTTAACGAAACAACAGgtaaatgata ... ctttttttagGTCGAATCAACTCTGGCTATGCAGAATTTACAGCCACAGATCAAAGCAATT
EST: TTCTCACTGTTATTGTGAAGGCTGCAACATTACCTTTAACGAAACAGCAG GTCGAATCAACTCTGGCTATGCAGAATTTACAGCCACAGATCAAAGCAATTEST: gi|66923693|gb|CX110541.1|CX110541
genomic: TTCTCACTGTTATTGTGAAGGCTGCAACATTACCTTTAACGAAACAACAGgtaaatgata ... ctttttttagGTCGAATCAACTCTGGCTATGCAGAATTTACAGCCACAGATCAAAGCAATT
EST: TTCTCACTGTTATTGTGAAGGCTGCAACATTACCTTTAACGAAACAACAG GTCGAATCAACTCTGGCTATGCAGAATTTACAGCCACAGATCAAAGCAATTEST: gi|58694651|gb|CK083338.1|CK083338
genomic: TTCTCACTGTTATTGTGAAGGCTGCAACATTACCTTTAACGAAACAACAGgtaaatgata ... ctttttttagGTCGAATCAACTCTGGCTATGCAGAATTTACAGCCACAGATCAAAGCAATT
EST: CTTT-ACGAAACAGCAG GTCGAATCAACTCTGGCTATGCAGAATTTACAGCCACAGATCAAAGCAATT
genomic: CTTTAACGAAACAACAGgtaaatgata ... ctttttttagGTCGAATCAACTCTGGCTATGCAGAATTTACAGCCACAGATCAAAGCAATT
agtaacatggatatggtgggttgagagttgtgctgtttttcctctctttttttagGTCGAATCAACTCTGGCTATGCAGAATTTACAGCCACAGATCAAAGCAATTCAACAGAGATATGCAGGAAATCAG
gagtaac putative branch site (score: 48)
ttgtgctgtttttcct putative PPT
tcttttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatgataaaatctggtctattttttaattaatgagtaacatggatatggtgggttgagagttgtgctgtttttcctctctttttttagGTCGAATCAACTCTGGCTATGCAGAATTTACAGCCACAGATCAAAGCAATTCAACAGAGATATGCAGGAAATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA