1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GAGCAAGAGAAAAGGCAACAAAGCGCTTGCTGCAGGAGATTCAGATCTTTCAGCCTCAACATCAGAGGATGAAGAGTCGGATGATGAGACTACTGAAGAGgtactcaatctttttttaccattcatttgtcctgctggagcactgtgtagtagacagttcaagctagtcatcttagaaaatcactattccccttaaaatagtccgtgtgaatcataacaaatttcaattactgatgtaaaacggacag
species | Oryza sativa |
transcript | LOC_Os01g05800.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AGAGGATGAAGAGTCGGATGATGAGACTACTGAAGAG CAGGGAGGACCTGAGGAAAGATACAATTCCAGTAGCAACAAGAAACTTCCAEST: gi|88983200|gb|CI020764.1|CI020764
genomic: AGAGGATGAAGAGTCGGATGATGAGACTACTGAAGAGgtactcaatc ... aaacggacagCAGGGAGGACCTGAGGAAAGATACAATTCCAGTAGCAACAAGAAACTTCCA
EST: CAGCCTCAACATCAGAGGATGAAGAGTCGGATGATGAGACTACTG-A-AG -AGGGAGGACCTGAGGAAAGATACAATTCCAGTAGCAACAAGAAACTTCCAEST: gi|86905375|gb|CI285338.1|CI285338
genomic: CAGCCTCAACATCAGAGGATGAAGAGTCGGATGATGAGACTACTGAAGAGgtactcaatc ... aaacggacagCAGGGAGGACCTGAGGAAAGATACAATTCCAGTAGCAACAAGAAACTTCCA
EST: CAGCCTCAACATCAGAGGATGAAGAGTCGGATGATGAGACTACTG-A-AG -AGGGAGGACCTGAGGAAAGATACAATTCCAGTAGCAACAAGAAACTTCCAEST: gi|29615537|gb|CB620549.1|CB620549
genomic: CAGCCTCAACATCAGAGGATGAAGAGTCGGATGATGAGACTACTGAAGAGgtactcaatc ... aaacggacagCAGGGAGGACCTGAGGAAAGATACAATTCCAGTAGCAACAAGAAACTTCCA
EST: CAGCCTCAACATCAGAGGACGAAGAATCGGATGATGAGATTACTGAAGAG CAGGGAGGACCTGAGGAAAGATACAATTCCAGTAGCAACAAGAAACTTCCAEST: gi|4714906|gb|AU056023.1|AU056023
genomic: CAGCCTCAACATCAGAGGATGAAGAGTCGGATGATGAGACTACTGAAGAGgtactcaatc ... aaacggacagCAGGGAGGACCTGAGGAAAGATACAATTCCAGTAGCAACAAGAAACTTCCA
EST: CAGCCTCAACATCAGAGGATGAAGAGTCGGATGATGAGACTACTG-A-AG -AGGGAGGACCTGAGGAAAGATACAATTCCAGTAGCAACAAGAAACTTCCAEST: gi|88994803|gb|CI036384.1|CI036384
genomic: CAGCCTCAACATCAGAGGATGAAGAGTCGGATGATGAGACTACTGAAGAGgtactcaatc ... aaacggacagCAGGGAGGACCTGAGGAAAGATACAATTCCAGTAGCAACAAGAAACTTCCA
EST: CAGCCTCAACATCAGAGGATGAAGAGTCGGATGATGAGACTACTG-A-AG -AGGGAGGACCTGAGGAAAGATACAATTCCAGTGGCAACAAGAAACTTCCAEST: gi|14713818|gb|AU197781.1|AU197781
genomic: CAGCCTCAACATCAGAGGATGAAGAGTCGGATGATGAGACTACTGAAGAGgtactcaatc ... aaacggacagCAGGGAGGACCTGAGGAAAGATACAATTCCAGTAGCAACAAGAAACTTCCA
EST: CAGCCTCAACATCAGAGGATGAAGAGTCGGATGATGAGACTACTGAAGAG CAGGGAGGACCTGAGGAAAGATACAATTCCAGTAGCAACAAGAAACTTCCAEST: gi|4714905|gb|AU056022.1|AU056022
genomic: CAGCCTCAACATCAGAGGATGAAGAGTCGGATGATGAGACTACTGAAGAGgtactcaatc ... aaacggacagCAGGGAGGACCTGAGGAAAGATACAATTCCAGTAGCAACAAGAAACTTCCA
EST: CAGCCTCAACATCAGAGGATGAAGAGTCGGATGATGAGACTACTG-A-AG -AGGGAGGACCTGAGGANAGATACAATTCCAGTAGCAACAAGAAACTTCCAEST: gi|29620328|gb|CB625340.1|CB625340
genomic: CAGCCTCAACATCAGAGGATGAAGAGTCGGATGATGAGACTACTGAAGAGgtactcaatc ... aaacggacagCAGGGAGGACCTGAGGAAAGATACAATTCCAGTAGCAACAAGAAACTTCCA
EST: CAGCCTCAACATCAGAGGACGAAGAATCGGATGATGAGATTACTG-A-AG -AGGGAGGACCTGAGGAAAGATACAATTCCAGTAGCAACAAGAAACTTCCA
genomic: CAGCCTCAACATCAGAGGATGAAGAGTCGGATGATGAGACTACTGAAGAGgtactcaatc ... aaacggacagCAGGGAGGACCTGAGGAAAGATACAATTCCAGTAGCAACAAGAAACTTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCAAGAGAAAAGGCAACAAAGCGCTTGCTGCAGGAGATTCAGATCTTTCAGCCTCAACATCAGAGGATGAAGAGTCGGATGATGAGACTACTGAAGAGgtactcaatctttttttaccattcatttgtcctgctggagcactgtgtagtagacagttcaagctagtcatcttagaaaatcactattccccttaaaatagtccgtgtgaatcataacaaatttcaattactgatgtaaaacggacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA