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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGTCATTATTCTGATCGCCTACTTCAATAGCGGCTCAGgtcagcttgaactccacttgaatattcttcttcacctgtttatttttgttccgtttagcttgtattgcaaaatggtgaaaaaaccgtagtgagagtaact...

Basic information

species Oryza sativa
transcript LOC_Os01g05070.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g05070.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G037134_T04 (Zea mays), 5'ss of exon 3
GGTGTCATTATTCTGATCGCCTACTTCAATAGCGGCTCAGgtcagcttgaactccac--ttgaatattcttcttca----cctgtttatttttg--ttccgtttagcttgta-ttgcaaaatggtgaaaaaac------cgtagtgagagtaact---
||||||||| ||||  ||||||||||||| ||||||||||||| | |  |  | | |  ||  ||   ||    ||    |||  ||| | |||  || |     | ||||  |||| | |||| || | |||       ||     |   ||||   
GGTGTCATTCTTCTCGTCGCCTACTTCAACAGCGGCTCAGGTCGGTTAAAGATTCTCGgttagattcgctcacccattttcctaattaatgttggattacaaaaggtttgtgcttgctacatggcgatagaacatgtcttgtgacatgtacaactcaa

upper sequence: LOC_Os01g05070.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G037134_T02 (Zea mays), 5'ss of exon 3
GGTGTCATTATTCTGATCGCCTACTTCAATAGCGGCTCAGgtcagcttgaactccac--ttgaatattcttcttca----cctgtttatttttg--ttccgtttagcttgta-ttgcaaaatggtgaaaaaac-cgtagtgagagtaact
||||||||| ||||  ||||||||||||| ||||||||||||| | |  |  | | |  ||  ||   ||    ||    |||  ||| | |||  || |     | ||||  |||| | |||| || | |||  ||  |          
GGTGTCATTCTTCTCGTCGCCTACTTCAACAGCGGCTCAGgtcggttaaagattctcggttagattcgctcacccattttcctaattaatgttggattacaaaaggtttgtgcttgctacatggcgatagaacatgtctt----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58674474|gb|CK063161.1|CK063161
EST:     GGTGTCATTATTCTGATCGCCTACTTCAATAGCGGCTCAG                         TTACTAGCAGAGAAGCTGTGAGCAGGTCTGAAG
genomic: GGTGTCATTATTCTGATCGCCTACTTCAATAGCGGCTCAGgtcagcttga ... ggtgtaacagTTACTAGCAGAGAAGCTGTGAGCAGGTCTGAAG
EST: gi|300215765|gb|HO088391.1|HO088391
EST:     GGGTGTCATTATTCTGATCGCCTACTTCAATAGCGGCTCAGGTGTAACAG                 
genomic: GGGTGTCATTATTCTGATCGCCTACTTCAATAGCGG--C-----T--CAGgtcagcttga ... gg