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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCCGGCGGGTGGCGGATGGGGGATTGCCGTCTGTCGGTGGCCTGCTTCACCCCAAGTCACGCTCGCCGCCCGTGCTCACCATCGCCCTCGTGGTCCTGgtagttttccatctttctttttgtcaatttagttgttaggatttctcatgtgctcagctgacagaagtgtgcttgtttttttttttgggggtttcag

Basic information

species Oryza sativa
transcript LOC_Os01g05070.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g05070.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G011031_T01 (Zea mays), 5'ss of exon 2
GAGCCGGCGGGTGGCGGATGGGGGATTGCCGTCTGTCGGTGGCCTGCTTCACCCCAAGTCACGCTCGCCGCCCGTGCTCACCATCGCCCTCGTGGTCCTGgtagttttccatctttctttttgtcaatttagttgttaggatttctcatgtgctcagctgacagaagtgtgcttgtttttttttttgggggtttcag
|||||||||||||||||| ||||| ||||||||  |||| |||| | | ||||| |||||||||||||| |||||||||||||| |||||||| ||||||||| |  || | ||||||  |||| |     | || |   | | ||  |      |  |  | |  |||  | || |   | |  |   | || |||
GAGCCGGCGGGTGGCGGACGGGGGCTTGCCGTCCTTCGGCGGCCCGTTCCACCCTAAGTCACGCTCGCCTCCCGTGCTCACCATTGCCCTCGTCGTCCTGgtaat--tctagctttctgcttgtta-cccggctgct---actgctgttacttcgaattttccgg-gtgctcatggtgcatatgctcatgtttgcag

upper sequence: LOC_Os01g05070.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G037134_T04 (Zea mays), 5'ss of exon 2
GAGCCGGCGGGTGGCGGATGGGGGATTGCCGTCTGTCGGTGGCCTGCTTCACCCCAAGTCACGCTCGCCGCCCGTGCTCACCATCGCCCTCGTGGTCCTGgtagttttccatctttctttttgtcaattta--gttgttaggatttctcatgtgctcagctgacagaagtgtg-cttgtttttttttttgggggtttcag
|||||||||||||||||| |||||  ||||| | ||||| |||||| | |||||||||||||||||||| |||||||| || || ||||| || ||||||||| |  || | || ||| ||||| |    |  | |  |    || ||   |   |   ||||  |   || | | | |  |  | ||||  |       
GAGCCGGCGGGTGGCGGACGGGGGTCTGCCGACAGTCGGAGGCCTGTTCCACCCCAAGTCACGCTCGCCTCCCGTGCTTACTATTGCCCTAGTCGTCCTGgtaat--tctagctctctgtttgttacccgactgctactgctgttactt-cgaattttcctgatggtgatggggcatatgctcatgtttgcag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58674474|gb|CK063161.1|CK063161
EST:     ACCCCAAGTCACGCTCGCCGCCCGTGCTCACCATCGCCCTCGTGGTCCTG                         GGTGTCATTATTCTGATCGCCTACTTCAATAGCGGCTCAG
genomic: ACCCCAAGTCACGCTCGCCGCCCGTGCTCACCATCGCCCTCGTGGTCCTGgtagttttcc ... ggggtttcagGGTGTCATTATTCTGATCGCCTACTTCAATAGCGGCTCAG