1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tagagatagcaaagtggaccagctcatactcgagtgccaaatatcgtggaccagctcatacttctaattgtcatttttctccaatggccaggtgtaacagTTACTAGCAGAGAAGCTGTGAGCAGGTCTGAAG
species | Oryza sativa |
transcript | LOC_Os01g05070.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGTGTCATTATTCTGATCGCCTACTTCAATAGCGGCTCAG TTACTAGCAGAGAAGCTGTGAGCAGGTCTGAAGEST: gi|300215765|gb|HO088391.1|HO088391
genomic: GGTGTCATTATTCTGATCGCCTACTTCAATAGCGGCTCAGgtcagcttga ... ggtgtaacagTTACTAGCAGAGAAGCTGTGAGCAGGTCTGAAG
EST: GGGTGTCATTATTCTGATCGCCTACTTCAATAGCGGCTCAGGTGTAACAG
genomic: GGGTGTCATTATTCTGATCGCCTACTTCAATAGCGG--C-----T--CAGgtcagcttga ... gg
gtggaccagctcatacttctaattgtcatttttctccaatggccaggtgtaacagTTACTAGCAGAGAAGCTGTGAGCAGGTCTGAAG
ttctaat putative branch site (score: 2)
taattgtcattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagagatagcaaagtggaccagctcatactcgagtgccaaatatcgtggaccagctcatacttctaattgtcatttttctccaatggccaggtgtaacagTTACTAGCAGAGAAGCTGTGAGCAGGTCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - -agcaaag
- - - - - - - - gaccagc
- - - - - - - - - - - - catactc