1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ccttgattctgtaccaaacattagttttataccgtttgctctgttgtaccattttgtctactgatgtttctctggattctgtattgttcttcttaagcagACTTCAAGTGGTAGAGTTGAAGCTACCTGGATTGAGCTAGTGATAATTGAAGCTAGGGATCTTATTGCTGCTGATCTCAGAGGCACTAGTGATCCTTATG
species | Oryza sativa |
transcript | LOC_Os01g03820.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TCAGGCTTCAAATAGAGCCAATAAAGAGTGATTTCAACGGTATCCTGAAG ACTTCAAGTGGTAGAGTTGAAEST: gi|58690700|gb|CK079387.1|CK079387
genomic: TCAGGCTTCAAATAGAGCCAATAAAGAGTGATTTCAACGGTATCCTGAAGgtatttgcct ... tcttaagcagACTTCAAGTGGTAGAGTTGAA
EST: TCAGGCTTCAAATAGAGCCAATAAAGAGTGATTTCAACGGTATCCTGAAG ACTTCAAGTGGTAGAGTTGAAGCTACCTGGATTGAGCTAGTGATAATTGAA
genomic: TCAGGCTTCAAATAGAGCCAATAAAGAGTGATTTCAACGGTATCCTGAAGgtatttgcct ... tcttaagcagACTTCAAGTGGTAGAGTTGAAGCTACCTGGATTGAGCTAGTGATAATTGAA
gtaccattttgtctactgatgtttctctggattctgtattgttcttcttaagcagACTTCAAGTGGTAGAGTTGAAGCTACCTGGATTGAGCTAGTGATAATTGAAGCTAGGGATCTTATTGCTGCTGATCTCAGAGGCACTAGTGATCCTTATG
tactgat putative branch site (score: 18)
ttgttcttctt putative PPT
attttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttgattctgtaccaaacattagttttataccgtttgctctgttgtaccattttgtctactgatgtttctctggattctgtattgttcttcttaagcagACTTCAAGTGGTAGAGTTGAAGCTACCTGGATTGAGCTAGTGATAATTGAAGCTAGGGATCTTATTGCTGCTGATCTCAGAGGCACTAGTGATCCTTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - gattctg
- - - - ctgtacc
- - - - - - - - - - - - - - - - - - - - ctgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgttct