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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagccttcgcgactctccttctctgctcctctcgatctcctgtctgcttggcctcacggtgtctctgcgcgaatcaatctccatgggtgcagGGACCTGGCCATAGCGTTGGCGACTCGACGG

Basic information

species Oryza sativa
transcript LOC_Os01g03820.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88422802|gb|CI573964.1|CI573964
EST:     CCTCCCTATTGCGTGCGTGGAGTGGAGCCACCTCGCCTTCTCCGCCTCCG                         GGACCTGGCCATAGCGTTGGCGACTCGACGG
genomic: CCTCCCTATTGCGTGCGTGGAGTGGAGCCACCTCGCCTTCTCCGCCTCCGgttagccttc ... atgggtgcagGGACCTGGCCATAGCGTTGGCGACTCGACGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctgtctgcttggcctcacggtgtctctgcgcgaatcaatctccatgggtgcagGGACCTGGCCATAGCGTTGGCGACTCGACGG
             gcctcac  putative branch site (score: 3)
                                        tctccat  putative PPT
                                  aatcaat  TA-rich tract