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TTGGGCTATAGGACATAATTCTGGTGCTGTTGCAAAACGTACTGAGCTTTGTGGACAAGAAGTTGGAATGGTTGTTCCATTTGAGGACATCAGGGGCGAGgtacatctctatagtaactactgatgtgttgtcactgtttctcttgcatccaaaacctgttttggatatgctgtaacatttagaaaaatggattcccaat...
species | Oryza sativa |
transcript | LOC_Os01g03820.1 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GAAGTTGGAATGGTTGTTCCATTTGAGGACATCAGGTGCGAG TTAACTGTCACTCTTGTGCTAAAAGAATGGCAATTCTCTGATGGCTCAGTTEST: gi|58694662|gb|CK083349.1|CK083349
genomic: GAAGTTGGAATGGTTGTTCCATTTGAGGACATCAGGGGCGAGgtacatctct ... tcccttgcagTTAACTGTCACTCTTGTGCTAAAAGAATGGCAATTCTCTGATGGCTCAGTT
EST: GTGGACAAGAAGTTGGAATGGTTGTTCCATTTGAGGACATCAGGGGCGAG TTAACTGTCACTCTTGTGCTAAAAGAATGGCAATTCTCTGATGGCTCAGTT
genomic: GTGGACAAGAAGTTGGAATGGTTGTTCCATTTGAGGACATCAGGGGCGAGgtacatctct ... tcccttgcagTTAACTGTCACTCTTGTGCTAAAAGAATGGCAATTCTCTGATGGCTCAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGGCTATAGGACATAATTCTGGTGCTGTTGCAAAACGTACTGAGCTTTGTGGACAAGAAGTTGGAATGGTTGTTCCATTTGAGGACATCAGGGGCGAGgtacatctctatagtaactactgatgtgttgtcactgtttctcttgcatccaaaacctgttttggatatgctgtaacatttagaaaaatggattcccaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaaa