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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaatctttgtctgtctgcctttataacaccaagtgagaatgttgcaactgaagttttcttaattctgatttgcagGAAAGACTTCATCCTGAAAATGTTGAAGCCAGTGTTGTAGTCCTTAGCACTATAGTCACAAAATGGAGCGAGCTGTCTCATAAGCTCAGTGCTGAATCTC

Basic information

species Oryza sativa
transcript LOC_Os01g03760.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|325493777|gb|JG458301.1|JG458301
EST:     GTGTATTCATTTGGTGCCTGACTCAAAATGCAGAGTCCTACAAGCTGTGG                         GAAAGACTTCATCCTGAACATGTTGAAGCCAGTGTTGTAGTCCTTAGCACT
genomic: GTGTATTCATTTGGTGCCTGACTCAAAATGCAGAGTCCTACAAGCTGTGGgtgagtaatc ... tgatttgcagGAAAGACTTCATCCTGAAAATGTTGAAGCCAGTGTTGTAGTCCTTAGCACT
EST: gi|27548128|gb|CA766270.2|CA766270
EST:     GTGTATTCATTTGGTGCCTGACTCAAAATGCAGAGTCCTACAAGCTGTGG                         GAAAGACTTCATCCTGAAAATGTTGAAGCCAGTGTTGTAGTCCTTAGCACT
genomic: GTGTATTCATTTGGTGCCTGACTCAAAATGCAGAGTCCTACAAGCTGTGGgtgagtaatc ... tgatttgcagGAAAGACTTCATCCTGAAAATGTTGAAGCCAGTGTTGTAGTCCTTAGCACT
EST: gi|88570918|gb|CI662291.1|CI662291
EST:     GTGTATTCATTTGGTGCCTGACTCAAAATGCAGAGTCCTACAAGCTGTGG                         GAAAGACTTCATCCTGAAAATGTTGAAGCCAGTGTTGTAGTCCTTAGCACT
genomic: GTGTATTCATTTGGTGCCTGACTCAAAATGCAGAGTCCTACAAGCTGTGGgtgagtaatc ... tgatttgcagGAAAGACTTCATCCTGAAAATGTTGAAGCCAGTGTTGTAGTCCTTAGCACT
EST: gi|88346801|gb|CI657352.1|CI657352
EST:     GTGTATTCATTTGGTGCCTGACTCAAAATGCAGAGTCCTACAAGCTGTGG                         GAAAGACTTCATCCTGAAAATGTTGAAGCCAGTGTTGTAGTCCTTAGCACT
genomic: GTGTATTCATTTGGTGCCTGACTCAAAATGCAGAGTCCTACAAGCTGTGGgtgagtaatc ... tgatttgcagGAAAGACTTCATCCTGAAAATGTTGAAGCCAGTGTTGTAGTCCTTAGCACT
EST: gi|38477248|gb|CF961381.1|CF961381
EST:     GTGTATTCATTTGGTGCCTGACTCAAAATGCAGAGTCCTACAAGCTGTGG                         GAAAGACTTCATCCTGAAAATGTTGAAGCCAGTGTTGTAGTCCTTAGCACT
genomic: GTGTATTCATTTGGTGCCTGACTCAAAATGCAGAGTCCTACAAGCTGTGGgtgagtaatc ... tgatttgcagGAAAGACTTCATCCTGAAAATGTTGAAGCCAGTGTTGTAGTCCTTAGCACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttataacaccaagtgagaatgttgcaactgaagttttcttaattctgatttgcagGAAAGACTTCATCCTGAAAATGTTGAAGCCAGTGTTGTAGTCCTTAGCACTATAGTCACAAAATGGAGCGAGCTGTCTCATAAGCTCAGTGCTGAATCTC
                              aagttttcttaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtaatctttgtctgtctgcctttataacaccaagtgagaatgttgcaactgaagttttcttaattctgatttgcagGAAAGACTTCATCCTGAAAATGTTGAAGCCAGTGTTGTAGTCCTTAGCACTATAGTCACAAAATGGAGCGAGCTGTCTCATAAGCTCAGTGCTGAATCTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA