1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ACAATCAAGGAGTTGGCCCTTGCTGGTCCTCCTGGCTCAAAAACCGTGAAACAAGCAGCACAGCAGCTTTTGCCATTGTGTGTGAAAGCAATGCAAGAAAgtgagctgtcatcctttttcaccctaacttctctttctatatagagcttgttacctttgttttgcaactctgagttgttgcattattgcacattatgttcag
species | Oryza sativa |
transcript | LOC_Os01g03760.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ACAAGCAGCACAGCAGCTTTTGCCATTGTGTGCGAAAGCAATGCAAGAAA ATAACGCAGACCTCACCGGGGAGTCTGCTGGTGTATTCATTTGGTGCCTGAEST: gi|40493511|gb|BX900802.1|BX900802
genomic: ACAAGCAGCACAGCAGCTTTTGCCATTGTGTGTGAAAGCAATGCAAGAAAgtgagctgtc ... ttatgttcagATAACGCAGACCTCACCGGGGAGTCTGCTGGTGTATTCATTTGGTGCCTGA
EST: ACAAGCAGCACAGCAGCTTTTGCCATTGTGTGTGAAAGCAATGCAAGAAA ATAACGCAGACCTCACCGGGGAGTCTGCTGGTGTATTCATTTGGTGCCTGAEST: gi|27548128|gb|CA766270.2|CA766270
genomic: ACAAGCAGCACAGCAGCTTTTGCCATTGTGTGTGAAAGCAATGCAAGAAAgtgagctgtc ... ttatgttcagATAACGCAGACCTCACCGGGGAGTCTGCTGGTGTATTCATTTGGTGCCTGA
EST: ACAAGCAGCACAGCAGCTTTTGCCATTGTGTGTGAAAGCAATGCAAGAAA ATAACGCAGACCTCACCGGGGAGTCTGCTGGTGTATTCATTTGGTGCCTGAEST: gi|38477248|gb|CF961381.1|CF961381
genomic: ACAAGCAGCACAGCAGCTTTTGCCATTGTGTGTGAAAGCAATGCAAGAAAgtgagctgtc ... ttatgttcagATAACGCAGACCTCACCGGGGAGTCTGCTGGTGTATTCATTTGGTGCCTGA
EST: ACAAGCAGCACAGCAGCTTTTGCCATTGTGTGTGAAAGCAATGCAAGAAA ATAACGCAGACCTCACCGGGGAGTCTGCTGGTGTATTCATTTGGTGCCTGA
genomic: ACAAGCAGCACAGCAGCTTTTGCCATTGTGTGTGAAAGCAATGCAAGAAAgtgagctgtc ... ttatgttcagATAACGCAGACCTCACCGGGGAGTCTGCTGGTGTATTCATTTGGTGCCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAATCAAGGAGTTGGCCCTTGCTGGTCCTCCTGGCTCAAAAACCGTGAAACAAGCAGCACAGCAGCTTTTGCCATTGTGTGTGAAAGCAATGCAAGAAAgtgagctgtcatcctttttcaccctaacttctctttctatatagagcttgttacctttgttttgcaactctgagttgttgcattattgcacattatgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA