1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTGGAATGTTTTGTTGGGCTCATTTCCTGTTTCCCACACTGTGTGCTAAGCCAAGTGGGAATCCCCAGACGAGAGATTTAGTTCTGCAGTTGCTCGAAAGgtatggctcaacttaaacctgattaagaatctagagccgtttttctgttttctgatatatatcagaagtatttatatgcataatcttttttgatatttcacgtgcag
species | Oryza sativa |
transcript | LOC_Os01g03760.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCAAGTGGGAATCCCCAGACGAGAGATTTAGTTCTGCAGTTGCTCGAAAG AATTTTGTCTGCCCCCAAAGCTCGAGGCATCTTACTGAATGGTGCTGTTAGEST: gi|40493511|gb|BX900802.1|BX900802
genomic: CCAAGTGGGAATCCCCAGACGAGAGATTTAGTTCTGCAGTTGCTCGAAAGgtatggctca ... tcacgtgcagAATTTTGTCTGCCCCCAAAGCTCGAGGCATCTTACTGAATGGTGCTGTTAG
EST: CCAAGTGGGAATCCCCAGACGAGAGATTTAGTTCTGCAGTTGCTCGAAAG AATTTTGTCTGCCCCCAAAGCTCGAGACATCTTACTGAATGGTGCTGTTAGEST: gi|27548128|gb|CA766270.2|CA766270
genomic: CCAAGTGGGAATCCCCAGACGAGAGATTTAGTTCTGCAGTTGCTCGAAAGgtatggctca ... tcacgtgcagAATTTTGTCTGCCCCCAAAGCTCGAGGCATCTTACTGAATGGTGCTGTTAG
EST: CCAAGTGGGAATCCCCAGACGAGAGATTTAGTTCTGCAGTTGCTCGAAAG AATTTTGTCTGCCCCCAAAGCTCGAGGCATCTTACTGAATGGTGCTGTTAGEST: gi|29645235|gb|CB650242.1|CB650242
genomic: CCAAGTGGGAATCCCCAGACGAGAGATTTAGTTCTGCAGTTGCTCGAAAGgtatggctca ... tcacgtgcagAATTTTGTCTGCCCCCAAAGCTCGAGGCATCTTACTGAATGGTGCTGTTAG
EST: CCAAGTGGGAATCCCCAGACGAGAGATTTAGTTCTGCAGTTGCTCGAAAG AATTTTGTCTGCCCCCAAAGCTCGAGGCATCTTACTGAATGGTGCTGTTAG
genomic: CCAAGTGGGAATCCCCAGACGAGAGATTTAGTTCTGCAGTTGCTCGAAAGgtatggctca ... tcacgtgcagAATTTTGTCTGCCCCCAAAGCTCGAGGCATCTTACTGAATGGTGCTGTTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGGAATGTTTTGTTGGGCTCATTTCCTGTTTCCCACACTGTGTGCTAAGCCAAGTGGGAATCCCCAGACGAGAGATTTAGTTCTGCAGTTGCTCGAAAGgtatggctcaacttaaacctgattaagaatctagagccgtttttctgttttctgatatatatcagaagtatttatatgcataatcttttttgatatttcacgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG